Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2179 bp · TkA03G001960|TK1151|cDNA
GTGAACGGAAGTGCTGCTGTTTCCCATCCCTGTTCTACGTAAGTCACCAACGACAATTTCCAGTTGGCAGCATCCATGGCCACCATTTGTTACTCCCGTTTCCATGTATTGCCTGCCACCACCACCACCACCACGACGGCAGCAGCCTCTCCTGCTATATTTCAATCTAAACCTAGTAGTATTAGAGCTTCCCTCACCACTCCGCCTGCGTTTGTTTCTCATTCTCAAACTCTAAACAATATTCAACCGATTGGAGAAGC...
1923 bp · TkA03G001960|TK1151|CDS
ATGGCCACCATTTGTTACTCCCGTTTCCATGTATTGCCTGCCACCACCACCACCACCACGACGGCAGCAGCCTCTCCTGCTATATTTCAATCTAAACCTAGTAGTATTAGAGCTTCCCTCACCACTCCGCCTGCGTTTGTTTCTCATTCTCAAACTCTAAACAATATTCAACCGATTGGAGAAGCGGCACCTCCTCGATGGTTCTCTCCCCTGGACTCCTTCTCCTCCTCTCGATTGCCCAACTCCCCTCTTCTCCTCTA...
Protein
Download Protein FASTA640 aa · TkA03G001960|TK1151|PROTEIN
MATICYSRFHVLPATTTTTTTAAASPAIFQSKPSSIRASLTTPPAFVSHSQTLNNIQPIGEAAPPRWFSPLDSFSSSRLPNSPLLLYLPGIGGSGLGLSLHHPRLGEMFDIWCLHIPATDRTPFPELVKLVESSVRSENRQSPERPIYLVGQSFGACLALSVAARNPHIDILLVLANSATCYNGSQLRPLIPVLQAMPNQLGANLHDMLNLITGMEKQTEALLAIFSDLPRLPELFSVETLLWKLKLLDSASSYTNSRLH...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA03G001960 |
|---|---|
| TK1151 ID | TkA03G001960 |
| OH-1004 ID | LXL04_003765 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 48.400 |
| Protein coverage (%) | TK1151 90.625 / OH-1004 85.263Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA03G001960 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:494787-498192 (+) | |||||||||
| Description | Similar to At1g54570: Acyltransferase-like protein At1g54570, chloroplastic | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006995 cellular response to nitrogen starvation Biological Process GO:0010150 leaf senescence Biological Process GO:0010866 regulation of triglyceride biosynthetic process Biological Process GO:0019432 triglyceride biosynthetic process Biological Process GO:0033306 phytol metabolic process Biological Process GO:0090693 plant organ senescence Biological Process GO:1904963 regulation of phytol biosynthetic process Biological Process GO:0009507 chloroplast Cellular Component GO:0010287 plastoglobule Cellular Component GO:0016020 membrane Cellular Component GO:0004144 diacylglycerol O-acyltransferase activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G54570 ath:AT3G26840 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00561Abhydrolase_183-308 aaPF00975Thioesterase115-165 aaPF12697Abhydrolase_6122-312 aaPF12146Hydrolase_4137-310 aaPF08840BAAT_C146-187 aaPF00975Thioesterase375-390 aaPF03982DAGAT439-596 aaPF30816CEP152_CC1587-613 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA03G001960 | PF00561 | Abhydrolase_1 | 83 | 308 | 1.1e-08 | 35.7 |
| TkA03G001960 | PF00975 | Thioesterase | 115 | 165 | 0.01 | 16.8 |
| TkA03G001960 | PF12697 | Abhydrolase_6 | 122 | 312 | 6.9e-09 | 37.4 |
| TkA03G001960 | PF12146 | Hydrolase_4 | 137 | 310 | 4.6e-10 | 39.9 |
| TkA03G001960 | PF08840 | BAAT_C | 146 | 187 | 0.24 | 12.2 |
| TkA03G001960 | PF00975 | Thioesterase | 375 | 390 | 0.01 | 16.8 |
| TkA03G001960 | PF03982 | DAGAT | 439 | 596 | 4.2e-07 | 29.9 |
| TkA03G001960 | PF30816 | CEP152_CC1 | 587 | 613 | 0.34 | 9.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.