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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G612480
Reference: TK1151 Chr: Chr02 Coordinates: 157973936-157976682 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1916 bp · TkA02G612480|TK1151|cDNA

TCAGCTACCCTAGTTTTACATTGATTCCTTCCTTTTGGTCAAAATTTTGTCTTTTTTCTTGATGTTTTAAACAACTTCTTGAGGTTTAAATCATACCCATATCGGTTTCTTGAACTTCTAGTCCATCTATACAATTTGCTAAAGTTTAAGTCTACCCATATCAATTTGTTGAAGTTTTGATCATTTCCTTATTGGTTTCTAGGAACCAAAAAGAGGCAGAAAAATCGACAAACGTTTTATAGCATCGTCTTCAAGTTGTG...

CDS

Download CDS FASTA

738 bp · TkA02G612480|TK1151|CDS

ATGAATACACGATACTTGGTTACTCCTGCATCAATATGCAATTCTGCGGTGGCAATTTCATTTTCTTTGATTCCAGAAGAACGGATGACAGAAAATACCGGTCCAAGGAGTCGGGTTCCAACTCGGGCCCAACCCGTCATCCCTTCTACTTTCATGGTAAGAATGGCAGTTAGGATATCAAGGGCAAGATGGTATAGTTATGCAAGAAGAGTGTTTCATTACCAAAACGGGTCAAGAGCGGATATCGGATCGAACCCGTT...

Protein

Download Protein FASTA

245 aa · TkA02G612480|TK1151|PROTEIN

MNTRYLVTPASICNSAVAISFSLIPEERMTENTGPRSRVPTRAQPVIPSTFMVRMAVRISRARWYSYARRVFHYQNGSRADIGSNPFNTSSWMHMELFGLIFQIVMISYTLSVSKEEKPVWPMRTWVSGYGIGCVLNLGLLFWRYRVFCLNQIGVESHGNIEESRNLETMNKCRTFMELFFAIWFVMGNVWVLMLDLGPFEWLLNWMCFAFHYSHGTPLHTRSLLYYSCFYVVLYQLLVICLDTT

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G612480
TK1151 IDTkA02G612480
OH-1004 IDLXL04_005658
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)31.500
Protein coverage (%)TK1151 44.082 / OH-1004 35.561
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G612480
LocationChr02:157973936-157976682 (+)
DescriptionSimilar to At4g11680: E3 ubiquitin-protein ligase At4g11680
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005658 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0046330 positive regulation of JNK cascade Biological Process
GO:0051865 protein autoubiquitination Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005637 nuclear inner membrane Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005765 lysosomal membrane Cellular Component
GO:0005768 endosome Cellular Component
KEGG gene cross-reference
ath:AT1G12760
ath:AT1G63170
ath:AT2G01735
ath:AT4G11680
mmu:24017
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.391
Rank 1 · TkA02G612480 · TK1151
Nucleus0.238
Rank 2 · TkA02G612480 · TK1151
Golgi apparatus0.173
Rank 3 · TkA02G612480 · TK1151
Cytoplasm0.166
Rank 4 · TkA02G612480 · TK1151
Cell membrane0.138
Rank 5 · TkA02G612480 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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