Gene Card
Gene overview
cDNA / CDS / Protein Sequences
cDNA
No cDNA sequence is available for this reference.
2571 bp · TkA02G609660|TK1151|CDS
ATGTCAACTCTCCCTCTTCTCTCTCCCGCCAATTTAGCTCCAACGTCTCACAAACACAGAAATCCTTGTAGCAAAAGAACCCAATTGGTTAAAACCCTAAAAAAACCCACTTTCGAACCTCTAAAGGACCGATTAATCCGTTTATCCAATGGCGGGCAGATTCAAGAAGCAATTTTAGTCCTTGATGTTATGACACAACAACACCAGCTCACCCCAGACCTCACTACCTTCTCCGTCCTCCTCAAATCTTGCATCCGAAC...
Protein
Download Protein FASTA856 aa · TkA02G609660|TK1151|PROTEIN
MSTLPLLSPANLAPTSHKHRNPCSKRTQLVKTLKKPTFEPLKDRLIRLSNGGQIQEAILVLDVMTQQHQLTPDLTTFSVLLKSCIRTRNFELGKLVHSKLNQSGIILDAIVLNSLISLYSKCGDWVTAKTIFDSMDGDGLRDLVSWSAMISCFVHNGMATQALLTFVEMLRHGESPNHFCFSAAIQACCNGENAWIGKVIFGFAIKTGYFESHVCVGCALLDLFAKGFQDLESAKKVFDKMSERNSVTWTLLITRYAQMG...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA02G609660 |
|---|---|
| TK1151 ID | TkA02G609660 |
| OH-1004 ID | LXL04_011831 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 98.900 |
| Protein coverage (%) | TK1151 99.883 / OH-1004 93.443Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA02G609660 | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:157261439-157265436 (-) | ||||||||||||||||||
| Description | Similar to EMB2261: Pentatricopeptide repeat-containing protein At3g49170, chloroplastic | ||||||||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||||||||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||||||||
| GO annotations (OH1004 source) | GO:0009451 RNA modification Biological Process GO:0009793 embryo development ending in seed dormancy Biological Process GO:0005739 mitochondrion Cellular Component GO:0009507 chloroplast Cellular Component GO:0003729 mRNA binding Molecular Function GO:0008270 zinc ion binding Molecular Function | ||||||||||||||||||
| KEGG gene cross-reference | ath:AT3G49170 ath:AT4G13650 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF29070MSC6_N28-187 aaPF23276TPR_2436-134 aaPF22330Rib_mS39_PPR40-71 aaPF17177PPR_long44-124 aaPF13428TPR_1447-73 aaPF01535PPR49-65 aaPF13041PPR_250-85 aaPF13812PPR_350-84 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA02G609660 | PF29070 | MSC6_N | 28 | 187 | 4.3e-21 | 76.1 |
| TkA02G609660 | PF23276 | TPR_24 | 36 | 134 | 7e-17 | 62.3 |
| TkA02G609660 | PF22330 | Rib_mS39_PPR | 40 | 71 | 0.00046 | 20.7 |
| TkA02G609660 | PF17177 | PPR_long | 44 | 124 | 2.5e-19 | 70.2 |
| TkA02G609660 | PF13428 | TPR_14 | 47 | 73 | 3.8e-07 | 30.9 |
| TkA02G609660 | PF01535 | PPR | 49 | 65 | 6.3e-66 | 214.9 |
| TkA02G609660 | PF13041 | PPR_2 | 50 | 85 | 3.2e-75 | 248.8 |
| TkA02G609660 | PF13812 | PPR_3 | 50 | 84 | 1.2e-35 | 122.1 |
| TkA02G609660 | PF14559 | TPR_19 | 51 | 72 | 0.0001 | 23.3 |
| TkA02G609660 | PF12854 | PPR_1 | 52 | 65 | 2.7e-39 | 133.3 |
| TkA02G609660 | PF29978 | ATP18_TPR | 56 | 99 | 0.00045 | 20.9 |
| TkA02G609660 | PF00917 | MATH | 64 | 159 | 0.16 | 13.0 |
| TkA02G609660 | PF12854 | PPR_1 | 70 | 83 | 2.7e-39 | 133.3 |
| TkA02G609660 | PF01535 | PPR | 76 | 105 | 6.3e-66 | 214.9 |
| TkA02G609660 | PF17049 | AEP1 | 95 | 135 | 0.0022 | 17.8 |
| TkA02G609660 | PF13812 | PPR_3 | 98 | 155 | 1.2e-35 | 122.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
Q5G1T1 | Arabidopsis thaliana | sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic | 58.400% | Swiss-Prot | High |
Q9SVP7 | Arabidopsis thaliana | sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 | 37.500% | Swiss-Prot | Medium |
Q7Y211 | Arabidopsis thaliana | sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic | 36.800% | Swiss-Prot | Medium |
Q9M1V3 | Arabidopsis thaliana | sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370, chloroplastic | 35.600% | Swiss-Prot | Medium |
Q9SS60 | Arabidopsis thaliana | sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580 | 36.900% | Swiss-Prot | Medium |