RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G609370
Reference: TK1151 Chr: Chr02 Coordinates: 157170097-157173413 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

783 bp · TkA02G609370|TK1151|cDNA

ATGTGCCAAGAACTGATGCGGATGCCAAAGTCTAGTCACCGGCAGGATAGGACCGGATCATATGCTGCCATAGATAATAATGATGATTTTATTTCTTCAGAATCAGACACGCAGATGCTTCTCATCAGGAGAAATTTATCGAGGATTTGGGTTCAGAGATGGAAAGTACATCTAATGAAGGCATGGAAATGGGGCGGGGAAGAAAAAAGTGGGAATGGTTATGAAAAAGACGAGTGCAAAGGGGCAGATGATGATGATCT...

CDS

Download CDS FASTA

783 bp · TkA02G609370|TK1151|CDS

ATGTGCCAAGAACTGATGCGGATGCCAAAGTCTAGTCACCGGCAGGATAGGACCGGATCATATGCTGCCATAGATAATAATGATGATTTTATTTCTTCAGAATCAGACACGCAGATGCTTCTCATCAGGAGAAATTTATCGAGGATTTGGGTTCAGAGATGGAAAGTACATCTAATGAAGGCATGGAAATGGGGCGGGGAAGAAAAAAGTGGGAATGGTTATGAAAAAGACGAGTGCAAAGGGGCAGATGATGATGATCT...

Protein

Download Protein FASTA

260 aa · TkA02G609370|TK1151|PROTEIN

MCQELMRMPKSSHRQDRTGSYAAIDNNDDFISSESDTQMLLIRRNLSRIWVQRWKVHLMKAWKWGGEEKSGNGYEKDECKGADDDDLVLDCPLHHLPLRPRVPISPSQNPAPTSDFRPTAYDVKVRHYQTAISIAYSPVEIYFIGRFLHYSMTLTPAELFGALFSPFACNLIKSQGAWLISTSCCLTLLDLSFGPGGLLYWARLYWARINCPLLRNELVLELGNNVIVDAKVWESETKIFQWFPGVGNFCGAIPFDQDLS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G609370
TK1151 IDTkA02G609370
OH-1004 IDLXL04_013977
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)79.500
Protein coverage (%)TK1151 16.923 / OH-1004 17.672
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G609370
LocationChr02:157170097-157173413 (-)
DescriptionSimilar to SYP61: Syntaxin-61
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_013977 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006886 intracellular protein transport Biological Process
GO:0006887 exocytosis Biological Process
GO:0006906 vesicle fusion Biological Process
GO:0007032 endosome organization Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0016189 synaptic vesicle to endosome fusion Biological Process
GO:0016192 vesicle-mediated transport Biological Process
GO:0032456 endocytic recycling Biological Process
GO:0032880 regulation of protein localization Biological Process
GO:0042147 retrograde transport, endosome to Golgi Biological Process
GO:0048193 Golgi vesicle transport Biological Process
GO:0048278 vesicle docking Biological Process
KEGG gene cross-reference
ath:AT1G28490
hsa:10228
mmu:58244
pon:100173487
rno:60562
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.416
Rank 1 · TkA02G609370 · TK1151
Cytoplasm0.373
Rank 2 · TkA02G609370 · TK1151
Mitochondrion0.131
Rank 3 · TkA02G609370 · TK1151
Cell membrane0.121
Rank 4 · TkA02G609370 · TK1151
Endoplasmic reticulum0.092
Rank 5 · TkA02G609370 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser