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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G602440
Reference: TK1151 Chr: Chr02 Coordinates: 155291116-155293914 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

897 bp · TkA02G602440|TK1151|cDNA

ATGGTTGGGGTGTATTGGGCTGCTAGACCTTACGATGCCGGGCCTTCGGAGTTGGTCCAACCCGGGTCGGTGAGGTCTCAGGTTCGAGTCTCACCAACAACCTGCCTCCGCGGTATTGTCCAAGGCGATATGGTTGGGGTGTATTGGGCTGCTAGACCTTACGATGCCGGGCCTTCGGAGTTGGTCCAACCCGGGTCTGACTCATCTGCCTATCCCACCTTCTCCGTTAAATACTTCCCCAAAATCATATCATCTCTCAA...

CDS

Download CDS FASTA

897 bp · TkA02G602440|TK1151|CDS

ATGGTTGGGGTGTATTGGGCTGCTAGACCTTACGATGCCGGGCCTTCGGAGTTGGTCCAACCCGGGTCGGTGAGGTCTCAGGTTCGAGTCTCACCAACAACCTGCCTCCGCGGTATTGTCCAAGGCGATATGGTTGGGGTGTATTGGGCTGCTAGACCTTACGATGCCGGGCCTTCGGAGTTGGTCCAACCCGGGTCTGACTCATCTGCCTATCCCACCTTCTCCGTTAAATACTTCCCCAAAATCATATCATCTCTCAA...

Protein

Download Protein FASTA

298 aa · TkA02G602440|TK1151|PROTEIN

MVGVYWAARPYDAGPSELVQPGSVRSQVRVSPTTCLRGIVQGDMVGVYWAARPYDAGPSELVQPGSDSSAYPTFSVKYFPKIISSLKYTVLRFHFNTELAGSFRVEKCEEIVDHQAVKYDGGAVLRSKLFPFTLFFFNLLFIMLNENEFESVKGSGGCVDAVSAAIETLEHHYRNYGDIFCDKCTQGRIALTAEENAQQVRVCDQCMAEVTQRLSHVNEVAANKASGFNRHEDLAKKLEEEMEKKRRATESNSNVANLQM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G602440
TK1151 IDTkA02G602440
OH-1004 IDLXL04_037394
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)95.700
Protein coverage (%)TK1151 77.852 / OH-1004 81.720
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G602440
LocationChr02:155291116-155293914 (-)
DescriptionSimilar to FREE1: Protein FREE1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g20110 Endosomal sorting complex required for transport (ESCRT) component regulating multivesicular body (MVB) protein sorting and plant growth.
A unique plant ESCRT component, FREE1, regulates multivesicular body protein sorting and plant growth.2014 · DOI: 10.1016/j.cub.2014.09.014
Dual roles of an Arabidopsis ESCRT component FREE1 in regulating vacuolar protein transport and autophagic degradation.2015 · DOI: 10.1073/pnas.1421271112
FYVE1 is essential for vacuole biogenesis and intracellular trafficking in Arabidopsis.2015 · DOI: 10.1104/pp.114.253377
FYVE1/FREE1 Interacts with the PYL4 ABA Receptor and Mediates Its Delivery to the Vacuolar Degradation Pathway.2016 · DOI: 10.1105/tpc.16.00178
The effect of ABRE BINDING FACTOR 4-mediated FYVE1 on salt stress tolerance in Arabidopsis.2020 · DOI: 10.1016/j.plantsci.2020.110489

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_037394 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007034 vacuolar transport Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process
GO:0015031 protein transport Biological Process
GO:0030100 regulation of endocytosis Biological Process
GO:0031623 receptor internalization Biological Process
GO:0032456 endocytic recycling Biological Process
GO:0036258 multivesicular body assembly Biological Process
GO:0051028 mRNA transport Biological Process
GO:0060586 multicellular organismal-level iron ion homeostasis Biological Process
GO:0070676 intralumenal vesicle formation Biological Process
GO:1900067 regulation of cellular response to alkaline pH Biological Process
KEGG gene cross-reference
ath:AT1G20110
hsa:55680
mmu:70432
uma:UMAG_03862
uma:UMAG_12183
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.512
Rank 1 · TkA02G602440 · TK1151
Nucleus0.351
Rank 2 · TkA02G602440 · TK1151
Mitochondrion0.109
Rank 3 · TkA02G602440 · TK1151
Cell membrane0.108
Rank 4 · TkA02G602440 · TK1151
Endoplasmic reticulum0.091
Rank 5 · TkA02G602440 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07191Zn_ribbon_6107-114 aa
PF01363FYVE170-211 aa
PF23137HVO_0758175-209 aa
PF05129Zn_ribbon_Elf1176-187 aa
PF07191Zn_ribbon_6176-210 aa
PF12773DZR178-211 aa
PF14901Jiv90178-208 aa
PF06906DUF1272179-189 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G602440PF07191Zn_ribbon_61071142.09.2
TkA02G602440PF01363FYVE1702114.2e-0833.9
TkA02G602440PF23137HVO_07581752095.97.5
TkA02G602440PF05129Zn_ribbon_Elf11761872.09.3
TkA02G602440PF07191Zn_ribbon_61762102.09.2
TkA02G602440PF12773DZR1782110.4611.4
TkA02G602440PF14901Jiv901782081.310.0
TkA02G602440PF06906DUF12721791897.67.4
TkA02G602440PF29994NMD3_N1802780.1413.2
TkA02G602440PF02150Zn_ribbon_RPB91802090.6810.6
TkA02G602440PF27609Rv13221932260.09913.5
TkA02G602440PF25214HVO_B0008_N2012106.27.5
TkA02G602440PF05129Zn_ribbon_Elf12452922.09.3
TkA02G602440PF06906DUF12722582917.67.4
TkA02G602440PF27609Rv13222592760.09913.5
TkA02G602440PF12773DZR2622920.4611.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ASS2Arabidopsis thalianasp|Q9ASS2|FREE1_ARATH Protein FREE159.200%Swiss-ProtLow

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