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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G590070
Reference: TK1151 Chr: Chr02 Coordinates: 152259548-152261260 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1317 bp · TkA02G590070|TK1151|cDNA

ATGATATCGATGCACATGCAATGTAGACGATTCGATCTTGCACTTTCTCAATTTGAGAAAATGACCGATCGAGATATCGTCACATGGAATTCAATGATTTCGGGTTACAATCAACACGGTTTCGATTCCGAATCTCTTCTTATGTTCTCAGAAATGCAAAAATCAAACAATCCGTCACTCAAACCAGATAAATACACGTTAGCAAGCGCTTTATCCGCGTGTACAAACACCAACAGCTTAAAAACCGGAAAACAAATCCA...

CDS

Download CDS FASTA

1317 bp · TkA02G590070|TK1151|CDS

ATGATATCGATGCACATGCAATGTAGACGATTCGATCTTGCACTTTCTCAATTTGAGAAAATGACCGATCGAGATATCGTCACATGGAATTCAATGATTTCGGGTTACAATCAACACGGTTTCGATTCCGAATCTCTTCTTATGTTCTCAGAAATGCAAAAATCAAACAATCCGTCACTCAAACCAGATAAATACACGTTAGCAAGCGCTTTATCCGCGTGTACAAACACCAACAGCTTAAAAACCGGAAAACAAATCCA...

Protein

Download Protein FASTA

438 aa · TkA02G590070|TK1151|PROTEIN

MISMHMQCRRFDLALSQFEKMTDRDIVTWNSMISGYNQHGFDSESLLMFSEMQKSNNPSLKPDKYTLASALSACTNTNSLKTGKQIHCHVIRTEFDLSGAVVSNALINMYAKSGSIGNAKRVFEIISGEKDSISWTSMVISLAQHGHGEESLKLFEKMLTFAIKPDHVTYVGVISACTHMGLVDTGRGYFKMMRERHGIEPTLSHYACMVDLLGRSGKLLEAYDVIKNMPIEPDVVAWGSLLSSSVVHKNVELAEVAAER...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G590070
TK1151 IDTkA02G590070
OH-1004 IDLXL04_012056
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)72.400
Protein coverage (%)TK1151 92.237 / OH-1004 45.431
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G590070
LocationChr02:152259548-152261260 (+)
DescriptionSimilar to PCMP-H41: Pentatricopeptide repeat-containing protein At2g22070
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g22070 Pentatricopeptide repeat-containing protein At2g22070. No verified direct reference in this release
At4g02750 Pentatricopeptide repeat-containing protein At4g02750. No verified direct reference in this release
At3g23330 Putative pentatricopeptide repeat-containing protein At3g23330. No verified direct reference in this release
At3g57430 Involved in RNA editing events in chloroplasts.
A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.2009 · DOI: 10.1105/tpc.109.071472
At1g68930 Putative pentatricopeptide repeat-containing protein At1g68930. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012056 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0010214 seed coat development Biological Process
GO:0140547 acquisition of seed longevity Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G25360
ath:AT1G68930
ath:AT2G22070
ath:AT4G02750
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.640
Rank 1 · TkA02G590070 · TK1151
Plastid0.173
Rank 2 · TkA02G590070 · TK1151
Nucleus0.090
Rank 3 · TkA02G590070 · TK1151
Cytoplasm0.034
Rank 4 · TkA02G590070 · TK1151
Peroxisome0.007
Rank 5 · TkA02G590070 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01535PPR1-25 aa
PF13041PPR_21-25 aa
PF13428TPR_143-23 aa
PF13176TPR_74-19 aa
PF13374TPR_104-20 aa
PF07719TPR_25-21 aa
PF00515TPR_15-20 aa
PF13041PPR_224-74 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G590070PF01535PPR1256.7e-33111.3
TkA02G590070PF13041PPR_21253.8e-2794.9
TkA02G590070PF13428TPR_143230.0614.8
TkA02G590070PF13176TPR_74190.02715.3
TkA02G590070PF13374TPR_104200.1612.8
TkA02G590070PF07719TPR_25210.00318.3
TkA02G590070PF00515TPR_15200.06313.8
TkA02G590070PF13041PPR_224743.8e-2794.9
TkA02G590070PF12854PPR_124528.2e-1761.4
TkA02G590070PF13812PPR_325551.3e-0938.7
TkA02G590070PF01535PPR27566.7e-33111.3
TkA02G590070PF29070MSC6_N271230.0003420.6
TkA02G590070PF23276TPR_2432730.05114.2
TkA02G590070PF17177PPR_long501330.0005620.1
TkA02G590070PF13812PPR_354821.3e-0938.7
TkA02G590070PF13041PPR_21011243.8e-2794.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SHZ8Arabidopsis thalianasp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g2207065.100%Swiss-ProtHigh
Q9SY02Arabidopsis thalianasp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g0275048.100%Swiss-ProtMedium
Q9LW63Arabidopsis thalianasp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g2333042.700%Swiss-ProtMedium
Q7Y211Arabidopsis thalianasp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic41.600%Swiss-ProtMedium
Q9CAA8Arabidopsis thalianasp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g6893043.200%Swiss-ProtMedium

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