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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G580850
Reference: TK1151 Chr: Chr02 Coordinates: 149852547-149853026 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

450 bp · TkA02G580850|TK1151|cDNA

ATGACAACTCAAGACTCTCAGTCCTTTCACTGGCGTTACGACGAGCTCGACGATAAAAACTTCCAAATCCGAGGCCGTACACTCTTCTTCATCATCGTACTCTTCTCCGTCATCTTCTTGATAACACTACTCTTCCTCTACGCTCGCTGGATCTGCCGGTCGTCCTCCTCTTCCGCGGCTGTGCAGCCCTGTTCACGGCCTCAAGGCCTAGATTCGATCGTGATCGATAGCCTACCTATCACTCTGCACCACCGGCCTTC...

CDS

Download CDS FASTA

450 bp · TkA02G580850|TK1151|CDS

ATGACAACTCAAGACTCTCAGTCCTTTCACTGGCGTTACGACGAGCTCGACGATAAAAACTTCCAAATCCGAGGCCGTACACTCTTCTTCATCATCGTACTCTTCTCCGTCATCTTCTTGATAACACTACTCTTCCTCTACGCTCGCTGGATCTGCCGGTCGTCCTCCTCTTCCGCGGCTGTGCAGCCCTGTTCACGGCCTCAAGGCCTAGATTCGATCGTGATCGATAGCCTACCTATCACTCTGCACCACCGGCCTTC...

Protein

Download Protein FASTA

149 aa · TkA02G580850|TK1151|PROTEIN

MTTQDSQSFHWRYDELDDKNFQIRGRTLFFIIVLFSVIFLITLLFLYARWICRSSSSSAAVQPCSRPQGLDSIVIDSLPITLHHRPSTASETAGESECCICIGEFDEGEKVKVLPNCCHTYHCECVDKWLTTHSSCPICRASLLVDSPV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G580850
TK1151 IDTkA02G580850
OH-1004 IDLXL04_012217
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)93.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G580850
LocationChr02:149852547-149853026 (-)
DescriptionSimilar to ATL66: RING-H2 finger protein ATL66
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g11110 RING-H2 finger protein ATL66. No verified direct reference in this release
At2g34990 RING-H2 finger protein ATL38. No verified direct reference in this release
At3g16720 May be involved in the early steps of the plant defense signaling pathway. No verified direct reference in this release
At4g40070 RING-H2 finger protein ATL32. No verified direct reference in this release
At2g27940 RING-H2 finger protein ATL57. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012217 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006952 defense response Biological Process
GO:0010200 response to chitin Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0048481 plant ovule development Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0016020 membrane Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT1G23980
ath:AT2G35000
ath:AT3G10910
ath:AT3G11110
ath:AT3G16720
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.288
Rank 1 · TkA02G580850 · TK1151
Lysosome / Vacuole0.287
Rank 2 · TkA02G580850 · TK1151
Cell membrane0.239
Rank 3 · TkA02G580850 · TK1151
Cytoplasm0.211
Rank 4 · TkA02G580850 · TK1151
Nucleus0.168
Rank 5 · TkA02G580850 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13639zf-RING_251-65 aa
PF12678zf-rbx151-62 aa
PF13923zf-C3HC4_251-64 aa
PF13920zf-C3HC4_351-64 aa
PF12861zf-ANAPC1151-67 aa
PF13445zf-RING_UBOX51-56 aa
PF17123zf-RING_1161-65 aa
PF14446Prok-RING_173-86 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G580850PF13639zf-RING_251651.6e-1351.4
TkA02G580850PF12678zf-rbx151627.6e-0730.0
TkA02G580850PF13923zf-C3HC4_251648.7e-0523.0
TkA02G580850PF13920zf-C3HC4_351640.001119.4
TkA02G580850PF12861zf-ANAPC1151670.02415.4
TkA02G580850PF13445zf-RING_UBOX51560.06813.9
TkA02G580850PF17123zf-RING_1161656.6e-0832.8
TkA02G580850PF14446Prok-RING_173860.4711.4
TkA02G580850PF13920zf-C3HC4_3951420.001119.4
TkA02G580850PF13639zf-RING_2971401.6e-1351.4
TkA02G580850PF17123zf-RING_11971266.6e-0832.8
TkA02G580850PF12678zf-rbx1971407.6e-0730.0
TkA02G580850PF13923zf-C3HC4_2971398.7e-0523.0
TkA02G580850PF14446Prok-RING_1971280.4711.4
TkA02G580850PF13445zf-RING_UBOX981370.06813.9
TkA02G580850PF00097zf-C3HC4981390.1712.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SRM0Arabidopsis thalianasp|Q9SRM0|ATL66_ARATH RING-H2 finger protein ATL6651.700%Swiss-ProtHigh
O64762Arabidopsis thalianasp|O64762|ATL38_ARATH RING-H2 finger protein ATL3832.800%Swiss-ProtMedium
Q8L9T5Arabidopsis thalianasp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL236.000%Swiss-ProtMedium
Q8W571Arabidopsis thalianasp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL3235.200%Swiss-ProtMedium
Q9SJJ7Arabidopsis thalianasp|Q9SJJ7|ATL57_ARATH RING-H2 finger protein ATL5742.400%Swiss-ProtMedium

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