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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G580510
Reference: TK1151 Chr: Chr02 Coordinates: 149762613-149772551 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

5755 bp · TkA02G580510|TK1151|cDNA

CTGGGACTAGGGTTTTACTGGCTTCACTTCTCGACCCGATAGTTCACTTGAAAACACAAAAAAAAGGCGGGAGACGGGAGCATATACCCCCAATTTTAAACAAAACCCCTTTCTTTCAAGCAATTCATCGAACACTTTGATTGCAAAGGAGACAATGTCATCAATCGGGGTCCGACACCTCACTATTCTTGGAGAGTTCAAGCCATTCGGTCTTATAGCTGAAGCTCTCGACGGGAAACCTGCGGACGAGGTCACAGACG...

CDS

Download CDS FASTA

5418 bp · TkA02G580510|TK1151|CDS

ATGTCATCAATCGGGGTCCGACACCTCACTATTCTTGGAGAGTTCAAGCCATTCGGTCTTATAGCTGAAGCTCTCGACGGGAAACCTGCGGACGAGGTCACAGACGAGTATGATTACTTCTTATTCGATCCAGAAGTAACTAGGCAGCAAGACGAATCTGATTCAGCTGACAATGAAGCCTCGTCTTCACTGAGTGATCGAAGCGATCACGAGCTGTTCATTAGAGGAAACCGGATAATATGGACAATAGGAGCAAGAGT...

Protein

Download Protein FASTA

1805 aa · TkA02G580510|TK1151|PROTEIN

MSSIGVRHLTILGEFKPFGLIAEALDGKPADEVTDEYDYFLFDPEVTRQQDESDSADNEASSSLSDRSDHELFIRGNRIIWTIGARVYKRFTLPGPVVMACWCRMGDLSEARLCVLQVDSLTIFSTSGDAVSIPLPRAVASIWPLPSGLLLQQTNESNPSTHSLFSSSSPLLNTLDIPRSKKDLGYSPQQTLNLRSSWDHMIKVDRASMSSHLILKDPLEEPQPIHIEERGKLNTMKEYDEKTIWTSDLIPLMASYHKGK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G580510
TK1151 IDTkA02G580510
OH-1004 IDLXL04_012223
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G580510
LocationChr02:149762613-149772551 (-)
DescriptionSimilar to APC1: Anaphase-promoting complex subunit 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g05560 Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012223 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0007091 metaphase/anaphase transition of mitotic cell cycle Biological Process
GO:0007346 regulation of mitotic cell cycle Biological Process
GO:0009553 embryo sac development Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0031145 anaphase-promoting complex-dependent catabolic process Biological Process
GO:0048481 plant ovule development Biological Process
GO:0051301 cell division Biological Process
GO:0051445 regulation of meiotic cell cycle Biological Process
GO:0070936 protein K48-linked ubiquitination Biological Process
GO:0070979 protein K11-linked ubiquitination Biological Process
GO:0141198 protein branched polyubiquitination Biological Process
KEGG gene cross-reference
hsa:64682
mmu:17222
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.558
Rank 1 · TkA02G580510 · TK1151
Cytoplasm0.366
Rank 2 · TkA02G580510 · TK1151
Mitochondrion0.054
Rank 3 · TkA02G580510 · TK1151
Golgi apparatus0.051
Rank 4 · TkA02G580510 · TK1151
Cell membrane0.048
Rank 5 · TkA02G580510 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12859ANAPC134-273 aa
PF29300APC1_5th171-212 aa
PF12859ANAPC1305-512 aa
PF18122APC1_C512-544 aa
PF20518Apc1_MidN515-782 aa
PF27562APC1_4th855-1044 aa
PF29300APC1_5th1050-1455 aa
PF01851PC_rep1122-1145 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G580510PF12859ANAPC1342734.7e-64217.8
TkA02G580510PF29300APC1_5th1712121.2e-128429.7
TkA02G580510PF12859ANAPC13055124.7e-64217.8
TkA02G580510PF18122APC1_C5125443.7e-35122.1
TkA02G580510PF20518Apc1_MidN5157825.4e-2692.4
TkA02G580510PF27562APC1_4th85510442.4e-63214.0
TkA02G580510PF29300APC1_5th105014551.2e-128429.7
TkA02G580510PF01851PC_rep112211454.8e-0936.9
TkA02G580510PF01851PC_rep119412164.8e-0936.9
TkA02G580510PF01851PC_rep129413274.8e-0936.9
TkA02G580510PF01851PC_rep136313774.8e-0936.9
TkA02G580510PF21282APC1_3rd145915213.6e-1660.2
TkA02G580510PF18122APC1_C159617583.7e-35122.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FFF9Arabidopsis thalianasp|Q9FFF9|APC1_ARATH Anaphase-promoting complex subunit 158.700%Swiss-ProtHigh

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