TkA02G578510 | RubberDandelionOmics

Gene overview

TkA02G578510

Reference: TK1151 Chr: Chr02 Coordinates: 149225474-149226542 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

723 bp · TkA02G578510|TK1151|cDNA

ATGGCTAACCAAGTATGTCAATCAGATAAATGTAGACACATAAAGGTCATACCTAAACCAATGCTATTGGTCAAAGTAAAGGTAGAAGGTTTAATTGGTGACGTTACACTAACGTTGTTTGACAAGGAAATATATCGTATTTTAAACCTTTCTGCAGTTGATTTAGTCGATAAACAAGAAAAGCTTGGGAAACCGACTGAACTTCCTGCGGATTTGTATGATCTGATTGAAAAAAAATTTGCTTTCAAAATACAAGTAAA...

CDS

Download CDS FASTA

723 bp · TkA02G578510|TK1151|CDS

ATGGCTAACCAAGTATGTCAATCAGATAAATGTAGACACATAAAGGTCATACCTAAACCAATGCTATTGGTCAAAGTAAAGGTAGAAGGTTTAATTGGTGACGTTACACTAACGTTGTTTGACAAGGAAATATATCGTATTTTAAACCTTTCTGCAGTTGATTTAGTCGATAAACAAGAAAAGCTTGGGAAACCGACTGAACTTCCTGCGGATTTGTATGATCTGATTGAAAAAAAATTTGCTTTCAAAATACAAGTAAA...

Protein

Download Protein FASTA

240 aa · TkA02G578510|TK1151|PROTEIN

MANQVCQSDKCRHIKVIPKPMLLVKVKVEGLIGDVTLTLFDKEIYRILNLSAVDLVDKQEKLGKPTELPADLYDLIEKKFAFKIQVKVAAYGYRTRYYNITKFTDDVDIVSQLEDLELKKTLYEQGINEDSINVSMPDMSSTVTVSSKDSTSFMSDNTPLSNSANGISGSPSSKITEKQDIVEARNSKRKLDDIIDVDDTVGQSATKPSRTTFGDIIGGVGTNLLSPKKEKGEEHSNEGE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G578510`
TK1151 ID	TkA02G578510
OH-1004 ID	LXL04_030169
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	71.800
Protein coverage (%)	TK1151 67.917 / OH-1004 32.929 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA02G578510`
Location	Chr02:149225474-149226542 (+)
Description	Similar to RPA1A: Replication protein A 70 kDa DNA-binding subunit A
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_030169` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0000723 telomere maintenance Biological Process GO:0000724 double-strand break repair via homologous recombination Biological Process GO:0006260 DNA replication Biological Process GO:0006261 DNA-templated DNA replication Biological Process GO:0006281 DNA repair Biological Process GO:0006284 base-excision repair Biological Process GO:0006289 nucleotide-excision repair Biological Process GO:0006298 mismatch repair Biological Process GO:0006310 DNA recombination Biological Process GO:0006974 DNA damage response Biological Process GO:0007004 telomere maintenance via telomerase Biological Process GO:0007131 reciprocal meiotic recombination Biological Process
KEGG gene cross-reference	ath:AT2G06510 ath:AT5G08020 dosa:Os02g0776800 hsa:6117 pon:100173266 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.976

Rank 1 · TkA02G578510 · TK1151

Cytoplasm0.109

Rank 2 · TkA02G578510 · TK1151

Cell membrane0.014

Rank 3 · TkA02G578510 · TK1151

Mitochondrion0.011

Rank 4 · TkA02G578510 · TK1151

Endoplasmic reticulum0.006

Rank 5 · TkA02G578510 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08646Rep_fac-A_C8-111 aa

PF08646Rep_fac-A_C144-180 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G578510	`PF08646`	Rep_fac-A_C	8	111	2e-05	25.1
TkA02G578510	`PF08646`	Rep_fac-A_C	144	180	2e-05	25.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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