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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G574080
Reference: TK1151 Chr: Chr02 Coordinates: 148248523-148250350 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1018 bp · TkA02G574080|TK1151|cDNA

CCGAACTCCGAAAGTAGTAGACGAGTACCGTTGTACATGTTGACCAGTCACGCAATTGCTTGACTACTTGCGTCTCCGTTCCCTTCCCCAATTCCTTCCGGAAACAACTTCCGGCGAGACATACGGTAATTGTTGTCTTCATAGTGGTGCCTGTGAAATGAAGAAGAAGAGAACAGGATCAGCACTGAAAACACAAGTGGAAGAAAAGAAGCTTAAAGTAACTGTTAAACATGAGACATCTGAGGATGAAGAATCAGAAA...

CDS

Download CDS FASTA

426 bp · TkA02G574080|TK1151|CDS

ATGAAGAAGAAGAGAACAGGATCAGCACTGAAAACACAAGTGGAAGAAAAGAAGCTTAAAGTAACTGTTAAACATGAGACATCTGAGGATGAAGAATCAGAAAGTGAAGAAGAAGAAACACAAGTAGTTGAAGAGGAAGAAGAGGAAGAAGAAGAAGAGGAAGAAGTGGAAGTTGAAGAAGAAGAAGAGGAAGAGGAAGAAGAAGAGGAAGAGGAAGAAGAAGATGATGATGATGAGAGTGAGAGTTCTAAAAAGGAGAC...

Protein

Download Protein FASTA

141 aa · TkA02G574080|TK1151|PROTEIN

MKKKRTGSALKTQVEEKKLKVTVKHETSEDEESESEEEETQVVEEEEEEEEEEEEVEVEEEEEEEEEEEEEEEEDDDDESESSKKETLKKLLEPLPKDKIIEFLKPHHTARSSCTDSGGTPHQTKSSPPSNHSAKSKNAKS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G574080
TK1151 IDTkA02G574080
OH-1004 IDLXL04_012289
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)92.400
Protein coverage (%)TK1151 74.468 / OH-1004 13.555
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G574080
LocationChr02:148248523-148250350 (+)
DescriptionSimilar to UBA2B: UBP1-associated protein 2B
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012289 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006952 defense response Biological Process
GO:0009693 ethylene biosynthetic process Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0010150 leaf senescence Biological Process
GO:0012501 programmed cell death Biological Process
GO:0048255 mRNA stabilization Biological Process
GO:0051028 mRNA transport Biological Process
GO:0005634 nucleus Cellular Component
GO:0005730 nucleolus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0003729 mRNA binding Molecular Function
GO:0035925 mRNA 3'-UTR AU-rich region binding Molecular Function
KEGG gene cross-reference
ath:AT2G22090
ath:AT2G41060
ath:AT3G15010
ath:AT3G56860
dosa:Os01g0265800
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.924
Rank 1 · TkA02G574080 · TK1151
Cytoplasm0.190
Rank 2 · TkA02G574080 · TK1151
Mitochondrion0.023
Rank 3 · TkA02G574080 · TK1151
Cell membrane0.019
Rank 4 · TkA02G574080 · TK1151
Extracellular0.011
Rank 5 · TkA02G574080 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03985Paf11-85 aa
PF11705RNA_pol_3_Rpc317-78 aa
PF13086AAA_117-92 aa
PF15250Raftlin7-87 aa
PF15101TERB210-101 aa
PF28447Ccdc2710-89 aa
PF04889Cwf_Cwc_1511-98 aa
PF04147Nop1415-101 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G574080PF03985Paf11850.06612.9
TkA02G574080PF11705RNA_pol_3_Rpc317780.710.6
TkA02G574080PF13086AAA_117925.87.3
TkA02G574080PF15250Raftlin7878.55.6
TkA02G574080PF15101TERB2101010.9310.1
TkA02G574080PF28447Ccdc2710896.76.1
TkA02G574080PF04889Cwf_Cwc_1511981.49.4
TkA02G574080PF04147Nop14151010.111.6
TkA02G574080PF06025DUF91316802.18.0
TkA02G574080PF24770Ig-CFAP74_217869.07.4
TkA02G574080PF30191LAG2_N181241.98.2
TkA02G574080PF28211GlpR181068.17.1
TkA02G574080PF02724CDC4520890.1211.4
TkA02G574080PF05327RRN3221100.559.4
TkA02G574080PF03666NPR323859.15.7
TkA02G574080PF30130VID28_C24821.68.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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