TkA02G564390 | RubberDandelionOmics

Gene overview

TkA02G564390

Reference: TK1151 Chr: Chr02 Coordinates: 145746767-145749628 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1611 bp · TkA02G564390|TK1151|cDNA

GTAGTTCGTAGTAGAAGAAGAACATTCTGTAGTACTACCGCCATTTCCATCGGAATCAAAAGCAAAATTACAACAAAATCTCCACCAAAAACAGAATCTCTCAAAAACCCTAATAGGATTCGAACTAGTAATGGATGCAGATACAGCTTTAGAGTTGGTGAAGAAAGGCGCTGCTCTTCTTTTCCTCGATGTTCCTCAACACACCCTTCTTGGCATCGATACTCAGATGTTTTCTGTCGGACCTAACTTTAAAGGTATCA...

CDS

Download CDS FASTA

1161 bp · TkA02G564390|TK1151|CDS

ATGGATGCAGATACAGCTTTAGAGTTGGTGAAGAAAGGCGCTGCTCTTCTTTTCCTCGATGTTCCTCAACACACCCTTCTTGGCATCGATACTCAGATGTTTTCTGTCGGACCTAACTTTAAAGGTATCAAGATGATTCCTCCAGGTCCTCACTTCATCTATTACAGTTCTTCAAACAGAGGTGGCAGTGAGTTTTCACCAATGATAGGTTTCTTTATCGAATTGAATCCATCTCAGGTAATTGTTCGTAAGTGGGATCA...

Protein

Download Protein FASTA

386 aa · TkA02G564390|TK1151|PROTEIN

MDADTALELVKKGAALLFLDVPQHTLLGIDTQMFSVGPNFKGIKMIPPGPHFIYYSSSNRGGSEFSPMIGFFIELNPSQVIVRKWDQQEERLVKISEEDEDRYSQAVRSLEFDKYLGPYTLSQFGEWKMLSNYITKSTIERIEPIGAEITIVHEHDIFGNNPKTAMEEALSDQLKNVKIPKSDDKITKRSCYYTKIPRLIKQKGVLGQDLTSLNLDKTSLLESILIKEYGGVEDLLLGELQFAFVAFLMGQSLEAFFQWK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G564390`
TK1151 ID	TkA02G564390
OH-1004 ID	LXL04_007000
Relationship / confidence	Rbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA02G564390`
Location	Chr02:145746767-145749628 (+)
Description	Similar to AAR2: Protein AAR2 homolog
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_007000` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0000244 spliceosomal tri-snRNP complex assembly Biological Process GO:0000387 spliceosomal snRNP assembly Biological Process GO:0048025 negative regulation of mRNA splicing, via spliceosome Biological Process GO:0005681 spliceosomal complex Cellular Component GO:0005682 U5 snRNP Cellular Component
KEGG gene cross-reference	hsa:25980 mmu:68295 pon:100174684 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.635

Rank 1 · TkA02G564390 · TK1151

Nucleus0.355

Rank 2 · TkA02G564390 · TK1151

Golgi apparatus0.105

Rank 3 · TkA02G564390 · TK1151

Lysosome / Vacuole0.093

Rank 4 · TkA02G564390 · TK1151

Cell membrane0.089

Rank 5 · TkA02G564390 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20981AAR2_1st13-144 aa

PF05282AAR2193-362 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G564390	`PF20981`	AAR2_1st	13	144	7e-47	159.7
TkA02G564390	`PF05282`	AAR2	193	362	9.7e-41	140.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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