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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G563520
Reference: TK1151 Chr: Chr02 Coordinates: 145554663-145557340 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1489 bp · TkA02G563520|TK1151|cDNA

AACTTTTGCTTAACGCCACGGCACCACTTCTCACGTTTCCTCCCCACCTTACATTCTCTCTCCCTCCGATTTAAACACAATAAACCCCCACACTTCACTCGCATTCTCTCTCGTCGTCGGTGGTATTTCCACATGGATTCCCACCTCACCACCACCACCACCTCCTCCGTCTTCTCCGCCGTCTCCCCCGCAGATCATACTCCGACATCCGCTTCCATCACTCACACCCTCAGTCTCATCCAAGACAACAACCATGATCC...

CDS

Download CDS FASTA

1284 bp · TkA02G563520|TK1151|CDS

AACTTTTGCTTAACGCCACGGCACCACTTCTCACGTTTCCTCCCCACCTTACATTCTCTCTCCCTCCGATTTAAACACAATAAACCCCCACACTTCACTCGCATTCTCTCTCGTCGTCGGTGGTATTTCCACATGGATTCCCACCTCACCACCACCACCACCTCCTCCGTCTTCTCCGCCGTCTCCCCCGCAGATCATACTCCGACATCCGCTTCCATCACTCACACCCTCAGTCTCATCCAAGACAACAACCATGATCC...

Protein

Download Protein FASTA

427 aa · TkA02G563520|TK1151|PROTEIN

NFCLTPRHHFSRFLPTLHSLSLRFKHNKPPHFTRILSRRRWYFHMDSHLTTTTTSSVFSAVSPADHTPTSASITHTLSLIQDNNHDPFTKIQAAKEIRRLTKTSQRCRRQFSDAILPLVSMLQSPSVEAKAAALLALLNLAVQDETNKIAIVDSGALEPIVTFLRSQNTNLQEYATASLATLSASVAKRSTIGKSGAIPFLVKIIDNGTPQAKMDAVLALSNLSSEFDNLKTILDSDPIPNLVTILKTSKKSSKISEKTT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G563520
TK1151 IDTkA02G563520
OH-1004 IDLXL04_006993
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.700
Protein coverage (%)TK1151 89.696 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G563520
LocationChr02:145554663-145557340 (+)
DescriptionSimilar to PUB4: U-box domain-containing protein 4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_006993 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007166 cell surface receptor signaling pathway Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0034614 cellular response to reactive oxygen species Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0048364 root development Biological Process
GO:0048658 anther wall tapetum development Biological Process
GO:0050777 negative regulation of immune response Biological Process
GO:0051865 protein autoubiquitination Biological Process
GO:0090333 regulation of stomatal closure Biological Process
GO:1904821 chloroplast disassembly Biological Process
GO:2000028 regulation of photoperiodism, flowering Biological Process
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT1G23030
ath:AT2G23140
ath:AT3G46510
ath:AT3G54790
ath:AT5G67340
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.535
Rank 1 · TkA02G563520 · TK1151
Nucleus0.441
Rank 2 · TkA02G563520 · TK1151
Cell membrane0.104
Rank 3 · TkA02G563520 · TK1151
Endoplasmic reticulum0.056
Rank 4 · TkA02G563520 · TK1151
Plastid0.047
Rank 5 · TkA02G563520 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26992DUF831835-60 aa
PF11050Viral_env_E2648-124 aa
PF30700ARM_GAC_1st71-270 aa
PF24768ARM_ARMC572-269 aa
PF25598ARM_PUB89-353 aa
PF13646HEAT_290-140 aa
PF28415SIL1_FES1_HPBP1_C95-114 aa
PF20239DUF6596101-140 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G563520PF26992DUF831835601.49.7
TkA02G563520PF11050Viral_env_E26481240.112.7
TkA02G563520PF30700ARM_GAC_1st712700.0004318.4
TkA02G563520PF24768ARM_ARMC5722696.5e-1969.1
TkA02G563520PF25598ARM_PUB893534e-1660.0
TkA02G563520PF13646HEAT_2901407.6e-0626.8
TkA02G563520PF28415SIL1_FES1_HPBP1_C951140.004617.2
TkA02G563520PF20239DUF65961011400.4911.4
TkA02G563520PF03224V-ATPase_H_N1042911.6e-0731.8
TkA02G563520PF26992DUF83181081691.49.7
TkA02G563520PF13513HEAT_EZ1091370.01916.2
TkA02G563520PF00514Arm1141418.2e-1967.7
TkA02G563520PF21547TTI11161420.212.3
TkA02G563520PF11841ELMO_ARM1171890.2112.2
TkA02G563520PF02985HEAT1171410.3312.1
TkA02G563520PF21050ARMC9_ARM1181340.0002321.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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