TkA02G559560 | RubberDandelionOmics

Gene overview

TkA02G559560

Reference: TK1151 Chr: Chr02 Coordinates: 144538169-144539443 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1236 bp · TkA02G559560|TK1151|cDNA

ATGATCAGAAGGTGCAAGAATTTGGGAATCCAAGAGTATCAGTTTCTCTTACGAGCAATAGTTAGCTCAGGTATCGGTGAAGAAACCTACGCCCCAAGAAACTTCCTCTCAGGCCAAGGAACAAACTCAAGACTAAGCGACAATCTAAGCGAAATGGACGAGTTCTTTACAGAAACCCTAGACAAGCTTTTCAGCAGATCTGGGGTTTCTCCACAAGACATTGACATCCTGGTTGTCAATGTCTCTGTGATGGCTTCAGT...

CDS

Download CDS FASTA

1236 bp · TkA02G559560|TK1151|CDS

ATGATCAGAAGGTGCAAGAATTTGGGAATCCAAGAGTATCAGTTTCTCTTACGAGCAATAGTTAGCTCAGGTATCGGTGAAGAAACCTACGCCCCAAGAAACTTCCTCTCAGGCCAAGGAACAAACTCAAGACTAAGCGACAATCTAAGCGAAATGGACGAGTTCTTTACAGAAACCCTAGACAAGCTTTTCAGCAGATCTGGGGTTTCTCCACAAGACATTGACATCCTGGTTGTCAATGTCTCTGTGATGGCTTCAGT...

Protein

Download Protein FASTA

411 aa · TkA02G559560|TK1151|PROTEIN

MIRRCKNLGIQEYQFLLRAIVSSGIGEETYAPRNFLSGQGTNSRLSDNLSEMDEFFTETLDKLFSRSGVSPQDIDILVVNVSVMASVPSLPSRIINHYKMRDDVKSFNLSGMGCSATLIAINIVQNMFKTHRNKFALVLTSEAISPSWYNGNERSMILTNCLFRCGGASVLLTNKRALRKKAMFKLKCLVRTHMGSSDEAFTCCTQQEDDKGHVGFFLGKTLPKTATRALTENLRTIAPKILPLTALFRYLNISVKRKAI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G559560`
TK1151 ID	TkA02G559560
OH-1004 ID	LXL04_012465
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	96.500
Protein coverage (%)	TK1151 100.000 / OH-1004 89.076 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G559560

Location Chr02:144538169-144539443 (-)

Description Similar to KCS12: 3-ketoacyl-CoA synthase 12

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g28630`	3-ketoacyl-CoA synthase 12.	No verified direct reference in this release
`At1g07720`	3-ketoacyl-CoA synthase 3.	No verified direct reference in this release
`At5g04530`	3-ketoacyl-CoA synthase 19.	No verified direct reference in this release
`At1g01120`	Contributes to cuticular wax and suberin biosynthesis.	KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.1999 · DOI: 10.1046/j.1365-313x.1999.00352.x Specific and differential inhibition of very-long-chain fatty acid elongases from Arabidopsis thaliana by different herbicides.2004 · DOI: 10.1073/pnas.0404600101 Substrate specificity of Arabidopsis 3-ketoacyl-CoA synthases.2006 · DOI: 10.1016/j.bbrc.2006.05.162
`At2g46720`	Contributes to cuticular wax and suberin biosynthesis (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012465 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000038 very long-chain fatty acid metabolic process Biological Process

GO:0006633 fatty acid biosynthetic process Biological Process

GO:0009409 response to cold Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0010025 wax biosynthetic process Biological Process

GO:0030497 fatty acid elongation Biological Process

GO:0042761 very long-chain fatty acid biosynthetic process Biological Process

GO:0070417 cellular response to cold Biological Process

GO:0160062 cutin-based cuticle development Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

KEGG gene cross-reference

ath:AT1G01120

ath:AT1G07720

ath:AT2G28630

ath:AT4G34250

ath:AT5G04530

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.759

Rank 1 · TkA02G559560 · TK1151

Cell membrane0.092

Rank 2 · TkA02G559560 · TK1151

Cytoplasm0.080

Rank 3 · TkA02G559560 · TK1151

Mitochondrion0.075

Rank 4 · TkA02G559560 · TK1151

Peroxisome0.048

Rank 5 · TkA02G559560 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08392FAE1_CUT1_RppA2-258 aa

PF08541ACP_syn_III_C65-79 aa

PF07451SpoVAD102-152 aa

PF08545ACP_syn_III112-175 aa

PF08541ACP_syn_III_C267-348 aa

PF02797Chal_sti_synt_C270-344 aa

PF01135PCMT306-347 aa

PF08545ACP_syn_III308-335 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G559560	`PF08392`	FAE1_CUT1_RppA	2	258	1.2e-102	343.9
TkA02G559560	`PF08541`	ACP_syn_III_C	65	79	1.7e-15	57.7
TkA02G559560	`PF07451`	SpoVAD	102	152	0.23	10.8
TkA02G559560	`PF08545`	ACP_syn_III	112	175	0.00043	20.8
TkA02G559560	`PF08541`	ACP_syn_III_C	267	348	1.7e-15	57.7
TkA02G559560	`PF02797`	Chal_sti_synt_C	270	344	3.6e-11	44.0
TkA02G559560	`PF01135`	PCMT	306	347	0.096	13.2
TkA02G559560	`PF08545`	ACP_syn_III	308	335	0.00043	20.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SIB2`	Arabidopsis thaliana	sp\|Q9SIB2\|KCS12_ARATH 3-ketoacyl-CoA synthase 12	62.200%	Swiss-Prot	High
`Q9LQP8`	Arabidopsis thaliana	sp\|Q9LQP8\|KCS3_ARATH 3-ketoacyl-CoA synthase 3	59.900%	Swiss-Prot	High
`Q9LZ72`	Arabidopsis thaliana	sp\|Q9LZ72\|KCS19_ARATH 3-ketoacyl-CoA synthase 19	57.000%	Swiss-Prot	High
`Q9MAM3`	Arabidopsis thaliana	sp\|Q9MAM3\|KCS1_ARATH 3-ketoacyl-CoA synthase 1	46.200%	Swiss-Prot	Medium
`Q9ZUZ0`	Arabidopsis thaliana	sp\|Q9ZUZ0\|KCS13_ARATH 3-ketoacyl-CoA synthase 13	45.000%	Swiss-Prot	Medium

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