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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G550460
Reference: TK1151 Chr: Chr02 Coordinates: 142024052-142029887 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3886 bp · TkA02G550460|TK1151|cDNA

TGGTTCGCATAGTTATTTAATTGCACCTAGAATGCTGTTATGCATTTTGAATTCTTTGATACGTCATAGCTTCTGAACTTGTAGAGGGGGAACATGGGAGAAGGTGAGGTATGTGTGGCTGTGCTGACCAATGTTGGGGAAATGAACAAGAGCCATGTGCTAAAACACCTCCCACAGATGGTTTAAATATTATTAAACCAGAACCTTCAGTTGAGCAGGTTATTAAAGAATGTTCAGATGGGTTGGATCTAGATGCTTCT...

CDS

Download CDS FASTA

3486 bp · TkA02G550460|TK1151|CDS

ATGTGTGGCTGTGCTGACCAATGTTGGGGAAATGAACAAGAGCCATGTGCTAAAACACCTCCCACAGATGGTTTAAATATTATTAAACCAGAACCTTCAGTTGAGCAGGTTATTAAAGAATGTTCAGATGGGTTGGATCTAGATGCTTCTGGTGAGGAGCTTGTCCAAGAATGTCTGAAGGTGACAGAACAACAGATATGTGAAAGTAAGCAAGCAAAAGAGAGTTTAAATTATAATGGTGTAAATCCTTCTGTCGAGCA...

Protein

Download Protein FASTA

1161 aa · TkA02G550460|TK1151|PROTEIN

MCGCADQCWGNEQEPCAKTPPTDGLNIIKPEPSVEQVIKECSDGLDLDASGEELVQECLKVTEQQICESKQAKESLNYNGVNPSVEQPVTEGLDNMELDPCGEKHSLEVSNDMEIEHIVEQPVKECLNEMVPEPIVEQPVKECLNEMVPEPIVEQPVKECLNEMVPEPIVEQPVKECLNEMVPEPIVEQPVKECLNEMVQESIVEQPVKECLIEVVLERIVEQPVMECLNNMKPEPNIEQPIKECMNEMELEPIAEQPVK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G550460
TK1151 IDTkA02G550460
OH-1004 IDLXL04_012605
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)94.800
Protein coverage (%)TK1151 99.053 / OH-1004 94.316
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G550460
LocationChr02:142024052-142029887 (-)
DescriptionSimilar to IDM1: Increased DNA methylation 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012605 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0000724 double-strand break repair via homologous recombination Biological Process
GO:0006338 chromatin remodeling Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0006366 transcription by RNA polymerase II Biological Process
GO:0007051 spindle organization Biological Process
GO:0007098 centrosome cycle Biological Process
GO:0008285 negative regulation of cell population proliferation Biological Process
GO:0010629 negative regulation of gene expression Biological Process
GO:0015671 oxygen transport Biological Process
KEGG gene cross-reference
ath:AT3G14980
hsa:1107
hsa:1108
mmu:107932
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.773
Rank 1 · TkA02G550460 · TK1151
Cytoplasm0.212
Rank 2 · TkA02G550460 · TK1151
Cell membrane0.074
Rank 3 · TkA02G550460 · TK1151
Endoplasmic reticulum0.034
Rank 4 · TkA02G550460 · TK1151
Golgi apparatus0.023
Rank 5 · TkA02G550460 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23011PHD-1st_NSD52-70 aa
PF03962Mnd1117-137 aa
PF03962Mnd1135-154 aa
PF03962Mnd1151-171 aa
PF03962Mnd1168-188 aa
PF03962Mnd1185-206 aa
PF03962Mnd1199-222 aa
PF00583Acetyltransf_1549-568 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G550460PF23011PHD-1st_NSD52701.5e-0525.7
TkA02G550460PF03962Mnd11171370.01116.7
TkA02G550460PF03962Mnd11351540.01116.7
TkA02G550460PF03962Mnd11511710.01116.7
TkA02G550460PF03962Mnd11681880.01116.7
TkA02G550460PF03962Mnd11852060.01116.7
TkA02G550460PF03962Mnd11992220.01116.7
TkA02G550460PF00583Acetyltransf_15495680.009516.9
TkA02G550460PF16135TDBD5506041.4e-2589.7
TkA02G550460PF28084HVO_A05567537701.89.3
TkA02G550460PF10080FtrD-like7577820.009716.7
TkA02G550460PF16135TDBD7598041.4e-2589.7
TkA02G550460PF00628PHD7597701.5e-0732.0
TkA02G550460PF18439zf_UBZ7627805.27.5
TkA02G550460PF13831PHD_27637708.1e-0522.7
TkA02G550460PF14446Prok-RING_17637700.3211.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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