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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G547120
Reference: TK1151 Chr: Chr02 Coordinates: 141178747-141183620 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3497 bp · TkA02G547120|TK1151|cDNA

ATCATATCAAAACAACTAAAAAGTAGTATTATTTTTTTTGACGAAATGATATATCAAAGGAATAAAAAACTCCAACCAAGTACTTCTGTACTTGCACATTCTAGTAGGCCCCGCATGTTTCTCGCTGATGATGGCCACTCCCTCTCCGGCGAAACACTACCTTCGTCACTGAAGCTTTCTCCTTCTTCATACTTATTCCCCAAAAAATCATCGCTTTCTTTAAACCCTTTTCCCACTAACTTAAAAGTTGTTCTGGCCCT...

CDS

Download CDS FASTA

2775 bp · TkA02G547120|TK1151|CDS

ATGGGGTTTAATCGGCCGTTGTTCTTAATCGTATTCGTCTTGGTTCTTCTTCACAGTTTCATGGAGTTCACTAAGTCCCAGATGCCAGCAGGTTTTGTAAGTCTAGATTGCGGCGGGGAAAAGACTCACACAGACAACCTCGGACTCGAGTGGACTCCCGACGATCAATTCATATACGGAACAACGACTAAAATATCCATCGAAAACGAGCCTAGACAGCAATACCAAACACTCCGATATTTCCCGGCGGATAATCGGAA...

Protein

Download Protein FASTA

924 aa · TkA02G547120|TK1151|PROTEIN

MGFNRPLFLIVFVLVLLHSFMEFTKSQMPAGFVSLDCGGEKTHTDNLGLEWTPDDQFIYGTTTKISIENEPRQQYQTLRYFPADNRKYCYSLNVKARTRYLIRATFLYGNFDNSNVYPKFDISLGPTHWSTIVISDANTIESQELIFLASDPTISVCLSNSKTGFPFISTLELRQFNGSIYLTPFENQFFLSVSARINFGAENQDPVRYPDDPFDRIWQSDLVKKANYLVDVADGTEKVSTKSPIDAGKDDLPPQKVMQT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G547120
TK1151 IDTkA02G547120
OH-1004 IDLXL04_012654
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G547120
LocationChr02:141178747-141183620 (-)
DescriptionSimilar to At1g67720: Probable LRR receptor-like serine/threonine-protein kinase At1g67720
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g67720 Probable LRR receptor-like serine/threonine-protein kinase At1g67720. No verified direct reference in this release
At1g51880 Probable LRR receptor-like serine/threonine-protein kinase At1g51880. No verified direct reference in this release
At1g51860 Probable LRR receptor-like serine/threonine-protein kinase At1g51860. No verified direct reference in this release
At1g51810 Probable LRR receptor-like serine/threonine-protein kinase At1g51810. No verified direct reference in this release
At1g51890 Probable LRR receptor-like protein kinase At1g51890. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012654 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0106310 protein serine kinase activity Molecular Function
KEGG gene cross-reference
ath:AT1G51810
ath:AT1G51860
ath:AT1G51880
ath:AT1G67720
ath:AT2G14510
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.852
Rank 1 · TkA02G547120 · TK1151
Endoplasmic reticulum0.082
Rank 2 · TkA02G547120 · TK1151
Cytoplasm0.076
Rank 3 · TkA02G547120 · TK1151
Nucleus0.038
Rank 4 · TkA02G547120 · TK1151
Lysosome / Vacuole0.035
Rank 5 · TkA02G547120 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12819Malectin_like35-366 aa
PF24048LRR_NXF1-5416-455 aa
PF13855LRR_8418-452 aa
PF12799LRR_4419-451 aa
PF00560LRR_1421-439 aa
PF00560LRR_1441-458 aa
PF13855LRR_8459-499 aa
PF12799LRR_4463-500 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G547120PF12819Malectin_like353667.8e-80269.3
TkA02G547120PF24048LRR_NXF1-54164550.1412.5
TkA02G547120PF13855LRR_84184523.4e-0730.6
TkA02G547120PF12799LRR_44194513.3e-0834.2
TkA02G547120PF00560LRR_14214392.4e-0524.3
TkA02G547120PF00560LRR_14414582.4e-0524.3
TkA02G547120PF13855LRR_84594993.4e-0730.6
TkA02G547120PF12799LRR_44635003.3e-0834.2
TkA02G547120PF24048LRR_NXF1-54634970.1412.5
TkA02G547120PF00560LRR_14644862.4e-0524.3
TkA02G547120PF00560LRR_14885072.4e-0524.3
TkA02G547120PF25933DUF79785335730.3610.7
TkA02G547120PF07714PK_Tyr_Ser-Thr6018704e-47161.4
TkA02G547120PF03109ABC16016290.0003820.4
TkA02G547120PF00069Pkinase6028692.7e-45155.5
TkA02G547120PF01636APH6487390.3711.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
C0LGI2Arabidopsis thalianasp|C0LGI2|Y1677_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g6772048.900%Swiss-ProtMedium
Q9FZB1Arabidopsis thalianasp|Q9FZB1|Y5188_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g5188034.900%Swiss-ProtMedium
C0LGG4Arabidopsis thalianasp|C0LGG4|Y1518_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g5186033.900%Swiss-ProtMedium
Q9FZB8Arabidopsis thalianasp|Q9FZB8|Y5181_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g5181034.100%Swiss-ProtMedium
C0LGG6Arabidopsis thalianasp|C0LGG6|Y5189_ARATH Probable LRR receptor-like protein kinase At1g5189033.300%Swiss-ProtMedium

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