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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G545400
Reference: TK1151 Chr: Chr02 Coordinates: 140645656-140648605 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2678 bp · TkA02G545400|TK1151|cDNA

CAACTCGCGTGTTTGAGTTTGAGCCAACTCGGCACTTCAAGTTCGAACTCGGTACAGAAACCCTAAAACCTTCCCTGTTCCCAGTCTCACCCATCACAGGAAAAATCACCGAAAATGGCTTCTCTCTGTATCCCTCTATCAAAACCACAACTCCTAAAACACTGCTTCTTCCATAAACTCTCAAAAATATCCAAACCCCTTCATCGTTTCTATTCATCTGCCGATAAACCACAAGTTGAAGAAAATCCAGACCCGAAATC...

CDS

Download CDS FASTA

1326 bp · TkA02G545400|TK1151|CDS

ATGGCTTCTCTCTGTATCCCTCTATCAAAACCACAACTCCTAAAACACTGCTTCTTCCATAAACTCTCAAAAATATCCAAACCCCTTCATCGTTTCTATTCATCTGCCGATAAACCACAAGTTGAAGAAAATCCAGACCCGAAATCACACCTTTCGACATTTGGATCACAAGCCGGGACGATCGAAAATGGAAAATTTCAATTCCGAGGTGAGCATAATCCCAATCTAGAGAACCTTGAAGATGCTGAGGGATCCGGGTT...

Protein

Download Protein FASTA

441 aa · TkA02G545400|TK1151|PROTEIN

MASLCIPLSKPQLLKHCFFHKLSKISKPLHRFYSSADKPQVEENPDPKSHLSTFGSQAGTIENGKFQFRGEHNPNLENLEDAEGSGFKHDRETYYEMIEILCKNRKLEDAKRILLGMSKNGVDYDEDLFVLLINGYAKMNRKWDIVKNCLKIFSKMEELGVPRTIKSYNPMLEVILSEKKYTMAEKFFHKMLSEGVVPTKQTYTLMITGLCRSSSIETANRFFQDMKSQNHLPDSALYNTMINGYVQVKKMEEAEKLLME...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G545400
TK1151 IDTkA02G545400
OH-1004 IDLXL04_012689
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)99.800
Protein coverage (%)TK1151 95.238 / OH-1004 57.772
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G545400
LocationChr02:140645656-140648605 (+)
DescriptionSimilar to 29 kDa ribonucleoprotein B, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g37230 Large ribosomal subunit protein mL102 (rPPR5). No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012689 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009409 response to cold Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0045087 innate immune response Biological Process
GO:1901259 chloroplast rRNA processing Biological Process
GO:0005783 endoplasmic reticulum Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009534 chloroplast thylakoid Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0009579 thylakoid Cellular Component
GO:0009941 chloroplast envelope Cellular Component
KEGG gene cross-reference
ath:AT2G37220
nsy:104230409
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.834
Rank 1 · TkA02G545400 · TK1151
Plastid0.087
Rank 2 · TkA02G545400 · TK1151
Nucleus0.061
Rank 3 · TkA02G545400 · TK1151
Cytoplasm0.045
Rank 4 · TkA02G545400 · TK1151
Cell membrane0.014
Rank 5 · TkA02G545400 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13812PPR_379-134 aa
PF25058ARM_TT2184-158 aa
PF28722WHD_Sfc3_5th85-109 aa
PF12854PPR_186-114 aa
PF28774DUF845787-126 aa
PF14559TPR_1987-121 aa
PF29070MSC6_N88-224 aa
PF23276TPR_2491-127 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G545400PF13812PPR_3791348.8e-39132.1
TkA02G545400PF25058ARM_TT21841589e-0729.7
TkA02G545400PF28722WHD_Sfc3_5th851090.008417.0
TkA02G545400PF12854PPR_1861141.4e-42143.8
TkA02G545400PF28774DUF8457871260.03815.0
TkA02G545400PF14559TPR_19871210.3212.1
TkA02G545400PF29070MSC6_N882242.4e-1763.8
TkA02G545400PF23276TPR_24911271e-1248.8
TkA02G545400PF13041PPR_2931381.7e-65217.6
TkA02G545400PF01535PPR931228.1e-45148.7
TkA02G545400PF24760TPR_IF140_C931170.01816.1
TkA02G545400PF17177PPR_long1062053.2e-1969.9
TkA02G545400PF23276TPR_241171791e-1248.8
TkA02G545400PF12854PPR_11241411.4e-42143.8
TkA02G545400PF20431E_motif1251460.3611.8
TkA02G545400PF24760TPR_IF140_C1261410.01816.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZUU3Arabidopsis thalianasp|Q9ZUU3|PP190_ARATH Large ribosomal subunit protein mL102 (rPPR5)48.500%Swiss-ProtLow

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