Gene Card
Gene overview
cDNA / CDS / Protein Sequences
714 bp · TkA02G544660|TK1151|cDNA
ATGCGTGTTCACCGGCGTCGTTTTCTATACTGCTCGAAGCCTTCGACGTCGTTTTCTATACTGCTCGAAGCCTTCGACTCCGGTGGAGTGGAGTTTGTGCTTCACCTTCGACGCTTTCTGGCCCCCGATTACTCCTTGAAATCGGAGACGAAGCTTTACTGTGATACCTGCAATAAGTTTCTAGTAGACCGGCTTGTTGAGGGGTCCTGCCCAACACCAGGTTATAATTACGATTTTGCCCGTCGAGATCAATGTGAAAA...
714 bp · TkA02G544660|TK1151|CDS
ATGCGTGTTCACCGGCGTCGTTTTCTATACTGCTCGAAGCCTTCGACGTCGTTTTCTATACTGCTCGAAGCCTTCGACTCCGGTGGAGTGGAGTTTGTGCTTCACCTTCGACGCTTTCTGGCCCCCGATTACTCCTTGAAATCGGAGACGAAGCTTTACTGTGATACCTGCAATAAGTTTCTAGTAGACCGGCTTGTTGAGGGGTCCTGCCCAACACCAGGTTATAATTACGATTTTGCCCGTCGAGATCAATGTGAAAA...
Protein
Download Protein FASTA237 aa · TkA02G544660|TK1151|PROTEIN
MRVHRRRFLYCSKPSTSFSILLEAFDSGGVEFVLHLRRFLAPDYSLKSETKLYCDTCNKFLVDRLVEGSCPTPGYNYDFARRDQCENCGKLLNPTELIKGLLSILHVIDVLSQQPVAITIKSKSTLALVKIDSSIPSPNATMTQSSSSFVGKSSCRMKERRCDYGDLCRISVSRTSDNPGRKFRGCPNYKDPDGGCGYFKWLDEDDFVSSDNKWCRTQQRNTVTMLLTLIVGLLMAI
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA02G544660 |
|---|---|
| TK1151 ID | TkA02G544660 |
| OH-1004 ID | LXL04_012697 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 94.000 |
| Protein coverage (%) | TK1151 98.312 / OH-1004 83.083Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA02G544660 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:140451135-140453136 (+) | ||||||||||||
| Description | Similar to Os06g0508700: Probable methionine--tRNA ligase | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
| ||||||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0006431 methionyl-tRNA aminoacylation Biological Process GO:0009791 post-embryonic development Biological Process GO:0048608 reproductive structure development Biological Process GO:0005730 nucleolus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0017101 aminoacyl-tRNA synthetase multienzyme complex Cellular Component GO:0000049 tRNA binding Molecular Function GO:0004825 methionine-tRNA ligase activity Molecular Function GO:0005524 ATP binding Molecular Function GO:0046872 metal ion binding Molecular Function | ||||||||||||
| KEGG gene cross-reference | ath:AT4G13780 bta:512531 cel:CELE_F58B3.5 jan:Jann_3145 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF26040Zn_ribbon_CLPX_N4-13 aaPF06839Zn_ribbon_GRF6-15 aaPF09334tRNA-synt_1g47-102 aaPF12773DZR51-94 aaPF26040Zn_ribbon_CLPX_N52-60 aaPF06839Zn_ribbon_GRF54-69 aaPF06839Zn_ribbon_GRF84-91 aaPF26040Zn_ribbon_CLPX_N84-96 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA02G544660 | PF26040 | Zn_ribbon_CLPX_N | 4 | 13 | 0.39 | 11.2 |
| TkA02G544660 | PF06839 | Zn_ribbon_GRF | 6 | 15 | 4.8e-10 | 40.1 |
| TkA02G544660 | PF09334 | tRNA-synt_1g | 47 | 102 | 1.7e-11 | 44.2 |
| TkA02G544660 | PF12773 | DZR | 51 | 94 | 0.91 | 10.5 |
| TkA02G544660 | PF26040 | Zn_ribbon_CLPX_N | 52 | 60 | 0.39 | 11.2 |
| TkA02G544660 | PF06839 | Zn_ribbon_GRF | 54 | 69 | 4.8e-10 | 40.1 |
| TkA02G544660 | PF06839 | Zn_ribbon_GRF | 84 | 91 | 4.8e-10 | 40.1 |
| TkA02G544660 | PF26040 | Zn_ribbon_CLPX_N | 84 | 96 | 0.39 | 11.2 |
| TkA02G544660 | PF12773 | DZR | 154 | 163 | 0.91 | 10.5 |
| TkA02G544660 | PF06839 | Zn_ribbon_GRF | 162 | 204 | 4.8e-10 | 40.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.