TkA02G544490 | RubberDandelionOmics

Gene overview

TkA02G544490

Reference: TK1151 Chr: Chr02 Coordinates: 140408315-140410414 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1284 bp · TkA02G544490|TK1151|cDNA

TTCTAATCCATACAACAATTTCATTAAAAAAATACTTGCCCACTTTTAGTCGTTGGGAGCCTTTTGTATTCTTCATTTCGTTGGTCAAATTAAGACTTCCATCGCCTCCGTTGGCTACTTGTTCTTCTCCTGCATCTCAGTTTTCCATTTTTCAACAATTACAATTTGATCTTTATCATCATAAGCTGATTAGAGAGAGACAGAAAACCTTGAGACACTATGATGTGCTTTCAGTCATCTTACTGCGGAGACAAGGATGA...

CDS

Download CDS FASTA

1065 bp · TkA02G544490|TK1151|CDS

ATGATGTGCTTTCAGTCATCTTACTGCGGAGACAAGGATGAAGTACCAGAAACTCCAACAAATCTAAGTACAATTCAGTCTCTCGGTTCTGGATCTACAGATCGTACGGCGTCTGGTTCAGAGTCAAATTCCCAAACTGCCTTCGAACCAAAATCCAAATTCAGAAAGATGAGGTATCCTAGTTTCTCAAAACGATCAAGTATCCTCAGAGAGTTCAAATTTTCCGAGCTCAAATCCGCCACAAAAAACTTCAGCATTGC...

Protein

Download Protein FASTA

354 aa · TkA02G544490|TK1151|PROTEIN

MMCFQSSYCGDKDEVPETPTNLSTIQSLGSGSTDRTASGSESNSQTAFEPKSKFRKMRYPSFSKRSSILREFKFSELKSATKNFSIASKLGEGGFGSVYTGTIKNPKDPSKDINVAVKQLGKRGFQGHKEWVTEVNVLGIVQHPNLVKLVGYCAEDHEKGIQRLLVYEYMPNRCVEYHLSPRSGTVLSWSTRLNIAQDTARGLAYLHEGMDFQIIFRDFKSSNILLDDKWNAKLSDFGMARLGPKEGYSHVTTAVVGTMG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G544490`
TK1151 ID	TkA02G544490
OH-1004 ID	LXL04_012701
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	84.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G544490

Location Chr02:140408315-140410414 (-)

Description Similar to PCRK1: Serine/threonine-protein kinase PCRK1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g09830`	Involved in the activation of early immune responses.	The receptor-like cytoplasmic kinase PCRK1 contributes to pattern-triggered immunity against Pseudomonas syringae in Arabidopsis thaliana.2015 · DOI: 10.1111/nph.13345 Functional characterization of PCRK1, a putative protein kinase with a role in immunity.2015 · DOI: 10.1080/15592324.2015.1063759
`At5g03320`	Functions redundantly with PCRK1 in basal resistance against bacterial pathogens and in regulation of plant immunity.	No verified direct reference in this release
`At5g47070`	May be involved in plant defense signaling.	No verified direct reference in this release
`At1g69790`	May be involved in plant defense signaling.	No verified direct reference in this release
`At4g17660`	May be involved in plant defense signaling.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012701 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002221 pattern recognition receptor signaling pathway Biological Process

GO:0006952 defense response Biological Process

GO:0007165 signal transduction Biological Process

GO:0007166 cell surface receptor signaling pathway Biological Process

GO:0009617 response to bacterium Biological Process

GO:0010073 meristem maintenance Biological Process

GO:0010078 maintenance of root meristem identity Biological Process

GO:0010088 phloem development Biological Process

GO:0010492 maintenance of shoot apical meristem identity Biological Process

GO:0031663 lipopolysaccharide-mediated signaling pathway Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0080142 regulation of salicylic acid biosynthetic process Biological Process

KEGG gene cross-reference

ath:AT3G01300

ath:AT3G09830

ath:AT3G28690

ath:AT5G03320

ath:AT5G15080

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.657

Rank 1 · TkA02G544490 · TK1151

Cytoplasm0.224

Rank 2 · TkA02G544490 · TK1151

Nucleus0.210

Rank 3 · TkA02G544490 · TK1151

Endoplasmic reticulum0.051

Rank 4 · TkA02G544490 · TK1151

Golgi apparatus0.030

Rank 5 · TkA02G544490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase85-270 aa

PF07714PK_Tyr_Ser-Thr86-271 aa

PF01636APH144-173 aa

PF01636APH202-244 aa

PF07714PK_Tyr_Ser-Thr275-297 aa

PF00069Pkinase277-297 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G544490	`PF00069`	Pkinase	85	270	2.1e-33	116.6
TkA02G544490	`PF07714`	PK_Tyr_Ser-Thr	86	271	3.4e-34	119.0
TkA02G544490	`PF01636`	APH	144	173	0.023	15.2
TkA02G544490	`PF01636`	APH	202	244	0.023	15.2
TkA02G544490	`PF07714`	PK_Tyr_Ser-Thr	275	297	3.4e-34	119.0
TkA02G544490	`PF00069`	Pkinase	277	297	2.1e-33	116.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SF86`	Arabidopsis thaliana	sp\|Q9SF86\|PCRK1_ARATH Serine/threonine-protein kinase PCRK1	50.800%	Swiss-Prot	High
`Q9LZF8`	Arabidopsis thaliana	sp\|Q9LZF8\|PCRK2_ARATH Serine/threonine-protein kinase PCRK2	48.400%	Swiss-Prot	Medium
`Q9LTC0`	Arabidopsis thaliana	sp\|Q9LTC0\|PBL19_ARATH Probable serine/threonine-protein kinase PBL19	55.100%	Swiss-Prot	Medium
`Q5XF79`	Arabidopsis thaliana	sp\|Q5XF79\|PBL18_ARATH Probable serine/threonine-protein kinase PBL18	54.500%	Swiss-Prot	Medium
`F4JPX3`	Arabidopsis thaliana	sp\|F4JPX3\|PBL20_ARATH Probable serine/threonine-protein kinase PBL20	55.300%	Swiss-Prot	Medium

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