TkA02G543820 | RubberDandelionOmics

Gene overview

TkA02G543820

Reference: TK1151 Chr: Chr02 Coordinates: 140258956-140261832 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1844 bp · TkA02G543820|TK1151|cDNA

TAAAATTGCAGTTGACCGTGCTTTAACTTTTTCGGGTAAGGATTGGGCTTGGGTCGGTTCGAATACGACCATCTCATCGGTCTTTCTCTGACTCTCAGTCGCTGCATATTGGTTCAACCTAACTTAGAGATTGAAGGGAAGGTCATGAAAATCCAAACACTCTCTTGACATCTTTACATAAAAATGGAGTCGCAAGTTTCATCCCATGAGATGTCCAACTCCAACCTACCAGAAAATGTAATCACATCTGAAGTTGCTTC...

CDS

Download CDS FASTA

1359 bp · TkA02G543820|TK1151|CDS

ATGGAGTCGCAAGTTTCATCCCATGAGATGTCCAACTCCAACCTACCAGAAAATGTAATCACATCTGAAGTTGCTTCTAATCAGCCAGCAAAGAAACAAAAACGGAAATGGGCTGCTTGGACACGTCAAGAACAGGAAAGCTTCTTTAATGCTCTACGTCAATTTGGCAAGAATTTTGAGAAGATAACTTGTCGTGTACAAAGTAAAAACAAGGATCAAGTTAGACACTATTATTATCGTCTAGTGAGGCGTATGAACAA...

Protein

Download Protein FASTA

452 aa · TkA02G543820|TK1151|PROTEIN

MESQVSSHEMSNSNLPENVITSEVASNQPAKKQKRKWAAWTRQEQESFFNALRQFGKNFEKITCRVQSKNKDQVRHYYYRLVRRMNKLLGPQLYLDAKNSKDTNSAMLRWWSLLEKHSCKASKLHLKPRRFKIFLQTLEHQLLKDRKKNTRKRAFHNGEKENKCNIDFATSSKKSGLLSGDKKLHSDPPLLTKLKLQLFPLNESIRKALEAEDHNPHLELTLSFRKKISSVLEHMNRKWGSCTISSSGELTLVPYHGQNL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G543820`
TK1151 ID	TkA02G543820
OH-1004 ID	LXL04_012708
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	92.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G543820

Location Chr02:140258956-140261832 (+)

Description Similar to TKI1: TSL-kinase interacting protein 1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g36960`	TSL-kinase interacting protein 1.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012708 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0007389 pattern specification process Biological Process

GO:0005634 nucleus Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0003682 chromatin binding Molecular Function

KEGG gene cross-reference

ath:AT2G36960

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.973

Rank 1 · TkA02G543820 · TK1151

Cytoplasm0.081

Rank 2 · TkA02G543820 · TK1151

Cell membrane0.029

Rank 3 · TkA02G543820 · TK1151

Endoplasmic reticulum0.016

Rank 4 · TkA02G543820 · TK1151

Plastid0.010

Rank 5 · TkA02G543820 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23078HTH_CHD6-927-65 aa

PF15963Myb_DNA-bind_733-88 aa

PF00249Myb_DNA-binding39-81 aa

PF25826DUF795240-80 aa

PF13921Myb_DNA-bind_640-87 aa

PF15963Myb_DNA-bind_7140-175 aa

PF27753Cramped_PI3K_like213-240 aa

PF27753Cramped_PI3K_like264-291 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G543820	`PF23078`	HTH_CHD6-9	27	65	0.15	12.6
TkA02G543820	`PF15963`	Myb_DNA-bind_7	33	88	4.8e-07	30.2
TkA02G543820	`PF00249`	Myb_DNA-binding	39	81	2.6e-07	31.3
TkA02G543820	`PF25826`	DUF7952	40	80	0.00014	22.8
TkA02G543820	`PF13921`	Myb_DNA-bind_6	40	87	0.028	15.3
TkA02G543820	`PF15963`	Myb_DNA-bind_7	140	175	4.8e-07	30.2
TkA02G543820	`PF27753`	Cramped_PI3K_like	213	240	0.01	16.6
TkA02G543820	`PF27753`	Cramped_PI3K_like	264	291	0.01	16.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8LJT8`	Arabidopsis thaliana	sp\|Q8LJT8\|TKI1_ARATH TSL-kinase interacting protein 1	36.100%	Swiss-Prot	Medium

JBrowse

View in Genome Browser

Gene Card