TkA02G540340 | RubberDandelionOmics

Gene overview

TkA02G540340

Reference: TK1151 Chr: Chr02 Coordinates: 139392313-139394125 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

998 bp · TkA02G540340|TK1151|cDNA

CCCAAACTCCGCCTGCAGACGAAAGAACCCTAAAAGGATCAAAATTCACAGTTTCACACACACTCATCATCTCATCAACGATGGCTTTGGCCATATCCAACGTCTTCCAAATTCCCAATTCTCGTTTTTCTGCCAAGAAGAGCATCTTCGTTCATAGCTCAATTTCTAATCTATCTCCATCCTTCGTAAGACTTTCTAAATGTCGGTTGAGTCAAAGGATAGTTTGCGCTGCTTCCTCAGCTGCTGGAAGTTCCAGTTCC...

CDS

Download CDS FASTA

918 bp · TkA02G540340|TK1151|CDS

ATGGCTTTGGCCATATCCAACGTCTTCCAAATTCCCAATTCTCGTTTTTCTGCCAAGAAGAGCATCTTCGTTCATAGCTCAATTTCTAATCTATCTCCATCCTTCGTAAGACTTTCTAAATGTCGGTTGAGTCAAAGGATAGTTTGCGCTGCTTCCTCAGCTGCTGGAAGTTCCAGTTCCGACAACGACTTAAATCCATACGAGGTTCTTGGCGTGAACCCGATAGAGGGATTTGATATGGTGAAGGCAGCTTACACAAG...

Protein

Download Protein FASTA

305 aa · TkA02G540340|TK1151|PROTEIN

MALAISNVFQIPNSRFSAKKSIFVHSSISNLSPSFVRLSKCRLSQRIVCAASSAAGSSSSDNDLNPYEVLGVNPIEGFDMVKAAYTRKRKDAERRGDEAAAARLEKAYDKLMMAQLTNRKKGVTFGSFQVSKDIKYADKQPIVPWGPRFTKSDEKDIRINMALSAAFIAWIVIARNADWKPVQFLSFVFVYRIFEKLKAFEPPVSTTFTEEGEDEGRMMRMGKRLLRSLALSFGCIAAASLGYTGLVNLIEFISGYVPVV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G540340`
TK1151 ID	TkA02G540340
OH-1004 ID	LXL04_012746
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	93.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G540340

Location Chr02:139392313-139394125 (-)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g08640`	Probably involved in the regulation of the fatty acid metabolic process in chloroplasts, especially chloroplastic galactolipids monogalactosyldiacylglycerol (MGDG) and digalactosyldiacylglycerol (DGDG).	A J-like protein influences fatty acid composition of chloroplast lipids in Arabidopsis.2011 · DOI: 10.1371/journal.pone.0025368

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_012746 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006631 fatty acid metabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009706 chloroplast inner membrane Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0031969 chloroplast membrane Cellular Component

KEGG gene cross-reference

ath:AT1G08640

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.971

Rank 1 · TkA02G540340 · TK1151

Nucleus0.030

Rank 2 · TkA02G540340 · TK1151

Mitochondrion0.024

Rank 3 · TkA02G540340 · TK1151

Cytoplasm0.017

Rank 4 · TkA02G540340 · TK1151

Peroxisome0.011

Rank 5 · TkA02G540340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF11833CPP1-like86-184 aa

PF03677UPF0137129-191 aa

PF11833CPP1-like220-250 aa

PF11833CPP1-like285-302 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G540340	`PF11833`	CPP1-like	86	184	1e-09	39.1
TkA02G540340	`PF03677`	UPF0137	129	191	0.28	11.7
TkA02G540340	`PF11833`	CPP1-like	220	250	1e-09	39.1
TkA02G540340	`PF11833`	CPP1-like	285	302	1e-09	39.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q93WG3`	Arabidopsis thaliana	sp\|Q93WG3\|CJD1_ARATH Protein CHLOROPLAST J-LIKE DOMAIN 1, chloroplastic	57.700%	Swiss-Prot	High

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