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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G537640
Reference: TK1151 Chr: Chr02 Coordinates: 138665920-138666417 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

468 bp · TkA02G537640|TK1151|cDNA

ATGAACACCCTAGAACAGCCACCATACCCCGAGAACACCGGAGAACCCGCTGGAATCGGCAACTACATATTCGTGGCCGGATTCGTCTTCTCCTTTCTCCTCCTATTCATCGTTACATACAGTTGTTACATGTGCAGGCAATCTCGATCACCGCCAACACCCACCGTCTCTATCCTTAGCACCACCCACGATGATACGTACGACCACCGCATAAGAATCTCTCCGGGTCTTGATGACGATGTTCTTGCCACTGTATCTCA...

CDS

Download CDS FASTA

468 bp · TkA02G537640|TK1151|CDS

ATGAACACCCTAGAACAGCCACCATACCCCGAGAACACCGGAGAACCCGCTGGAATCGGCAACTACATATTCGTGGCCGGATTCGTCTTCTCCTTTCTCCTCCTATTCATCGTTACATACAGTTGTTACATGTGCAGGCAATCTCGATCACCGCCAACACCCACCGTCTCTATCCTTAGCACCACCCACGATGATACGTACGACCACCGCATAAGAATCTCTCCGGGTCTTGATGACGATGTTCTTGCCACTGTATCTCA...

Protein

Download Protein FASTA

155 aa · TkA02G537640|TK1151|PROTEIN

MNTLEQPPYPENTGEPAGIGNYIFVAGFVFSFLLLFIVTYSCYMCRQSRSPPTPTVSILSTTHDDTYDHRIRISPGLDDDVLATVSHKGGTDVNDSGCSICLADYKPAEVVRLLQECGHFFHVKCIDMWLKAHSNCPVCRKSVLAETVLPPLLQS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G537640
TK1151 IDTkA02G537640
OH-1004 IDLXL04_012797
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)93.900
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G537640
LocationChr02:138665920-138666417 (+)
DescriptionSimilar to ATL9: E3 ubiquitin-protein ligase ATL9
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g46160 RING-H2 finger protein ATL67. No verified direct reference in this release
At5g06490 Putative RING-H2 finger protein ATL71. No verified direct reference in this release
At3g61550 RING-H2 finger protein ATL68. No verified direct reference in this release
At2g46493 Putative RING-H2 finger protein ATL21C. No verified direct reference in this release
At2g46494 Putative RING-H2 finger protein ATL21B. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012797 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0010200 response to chitin Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0016020 membrane Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT2G35000
ath:AT2G35910
ath:AT4G10150
ath:AT4G40070
ath:AT5G06490
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.328
Rank 1 · TkA02G537640 · TK1151
Cell membrane0.269
Rank 2 · TkA02G537640 · TK1151
Endoplasmic reticulum0.238
Rank 3 · TkA02G537640 · TK1151
Cytoplasm0.205
Rank 4 · TkA02G537640 · TK1151
Golgi apparatus0.160
Rank 5 · TkA02G537640 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19388DUF596324-59 aa
PF04641Rtf226-49 aa
PF28747SECTM1_C32-49 aa
PF12861zf-ANAPC1138-48 aa
PF23413zf_RING_Vps8_fungal39-47 aa
PF03854zf-P1139-46 aa
PF13920zf-C3HC4_340-48 aa
PF23412zf_RING_Vps840-45 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G537640PF19388DUF596324590.06614.1
TkA02G537640PF04641Rtf226490.02614.6
TkA02G537640PF28747SECTM1_C32490.01316.0
TkA02G537640PF12861zf-ANAPC1138483.3e-0627.8
TkA02G537640PF23413zf_RING_Vps8_fungal39470.799.8
TkA02G537640PF03854zf-P1139465.67.4
TkA02G537640PF13920zf-C3HC4_340481.9e-0525.1
TkA02G537640PF23412zf_RING_Vps840450.01216.2
TkA02G537640PF24921RING_XB3-XBAT3140480.3611.6
TkA02G537640PF13639zf-RING_241463.7e-1453.4
TkA02G537640PF12678zf-rbx141561.3e-0835.6
TkA02G537640PF14634zf-RING_541471.6e-0525.5
TkA02G537640PF22908PHD_NSD41500.01816.1
TkA02G537640PF14447Prok-RING_441480.02815.0
TkA02G537640PF21202SLX1_C41500.2612.3
TkA02G537640PF13923zf-C3HC4_242456.4e-0936.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O82353Arabidopsis thalianasp|O82353|ATL67_ARATH RING-H2 finger protein ATL6732.500%Swiss-ProtMedium
Q9FG21Arabidopsis thalianasp|Q9FG21|ATL71_ARATH Putative RING-H2 finger protein ATL7150.900%Swiss-ProtLow
Q9M313Arabidopsis thalianasp|Q9M313|ATL68_ARATH RING-H2 finger protein ATL6846.300%Swiss-ProtLow
P0CH03Arabidopsis thalianasp|P0CH03|AT21C_ARATH Putative RING-H2 finger protein ATL21C57.800%Swiss-ProtLow
P0CH02Arabidopsis thalianasp|P0CH02|AT21B_ARATH Putative RING-H2 finger protein ATL21B57.800%Swiss-ProtLow

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