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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G537570
Reference: TK1151 Chr: Chr02 Coordinates: 138646356-138651603 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

474 bp · TkA02G537570|TK1151|cDNA

ATGGACGCCGGCGATTCCTACTCTGACGACACCGGCCGGAAAACCCAAGGAAACATCACGTATCTCCTGGCAGTCTCCGGTGCTCTCACCTTTATCCTACTCATCATTTCCTATGTTTCTTGGATGTGCAAACGCAGAACAAGCTCTCAATCACCACCAGACGATGATGATGACGACGGCAACCACCTTCTGACAGTCTCTCGAGGTGTTGACGACGCCGTGCTCATGACTTTCCCGGCGATTGCTTACTCCGACCATCC...

CDS

Download CDS FASTA

474 bp · TkA02G537570|TK1151|CDS

ATGGACGCCGGCGATTCCTACTCTGACGACACCGGCCGGAAAACCCAAGGAAACATCACGTATCTCCTGGCAGTCTCCGGTGCTCTCACCTTTATCCTACTCATCATTTCCTATGTTTCTTGGATGTGCAAACGCAGAACAAGCTCTCAATCACCACCAGACGATGATGATGACGACGGCAACCACCTTCTGACAGTCTCTCGAGGTGTTGACGACGCCGTGCTCATGACTTTCCCGGCGATTGCTTACTCCGACCATCC...

Protein

Download Protein FASTA

157 aa · TkA02G537570|TK1151|PROTEIN

MDAGDSYSDDTGRKTQGNITYLLAVSGALTFILLIISYVSWMCKRRTSSQSPPDDDDDDGNHLLTVSRGVDDAVLMTFPAIAYSDHPAPPKVDSADGSGCSICLGDYKPTDVIRLLPKCDHFFHRKCIDTWLKVHPTCPVCRNSPLPDKLSIQIQRS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G537570
TK1151 IDTkA02G537570
OH-1004 IDLXL04_012799
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)73.700
Protein coverage (%)TK1151 99.363 / OH-1004 96.855
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G537570
LocationChr02:138646356-138651603 (+)
DescriptionSimilar to ATL71: Putative RING-H2 finger protein ATL71
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g35910 RING-H2 finger protein ATL70. No verified direct reference in this release
At5g06490 Putative RING-H2 finger protein ATL71. No verified direct reference in this release
At2g46160 RING-H2 finger protein ATL67. No verified direct reference in this release
At2g46494 Putative RING-H2 finger protein ATL21B. No verified direct reference in this release
At3g61550 RING-H2 finger protein ATL68. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012799 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0016567 protein ubiquitination Biological Process
GO:0005634 nucleus Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT2G35910
ath:AT2G46160
ath:AT3G61550
ath:AT5G06490
ath:AT5G07040
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.393
Rank 1 · TkA02G537570 · TK1151
Lysosome / Vacuole0.270
Rank 2 · TkA02G537570 · TK1151
Endoplasmic reticulum0.225
Rank 3 · TkA02G537570 · TK1151
Cytoplasm0.167
Rank 4 · TkA02G537570 · TK1151
Nucleus0.109
Rank 5 · TkA02G537570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00628PHD40-44 aa
PF22908PHD_NSD42-50 aa
PF16685zf-RING_1087-107 aa
PF14446Prok-RING_198-128 aa
PF13920zf-C3HC4_399-143 aa
PF13639zf-RING_2100-142 aa
PF17123zf-RING_11100-128 aa
PF13923zf-C3HC4_2100-141 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G537570PF00628PHD40442.48.9
TkA02G537570PF22908PHD_NSD42500.5411.3
TkA02G537570PF16685zf-RING_10871070.04514.6
TkA02G537570PF14446Prok-RING_1981280.2612.2
TkA02G537570PF13920zf-C3HC4_3991430.001319.2
TkA02G537570PF13639zf-RING_21001426.1e-1555.9
TkA02G537570PF17123zf-RING_111001287e-1142.3
TkA02G537570PF13923zf-C3HC4_21001416.8e-0936.1
TkA02G537570PF00097zf-C3HC41001412e-0834.6
TkA02G537570PF13445zf-RING_UBOX1001392.7e-0628.0
TkA02G537570PF14634zf-RING_51001421.6e-0525.5
TkA02G537570PF23412zf_RING_Vps81001290.2811.7
TkA02G537570PF12906RINGv1001410.8510.5
TkA02G537570PF14570zf-RING_41001431.89.1
TkA02G537570PF00628PHD1001352.48.9
TkA02G537570PF23555zf-RING_Vps411051290.1212.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8RX29Arabidopsis thalianasp|Q8RX29|ATL70_ARATH RING-H2 finger protein ATL7036.200%Swiss-ProtMedium
Q9FG21Arabidopsis thalianasp|Q9FG21|ATL71_ARATH Putative RING-H2 finger protein ATL7149.400%Swiss-ProtMedium
O82353Arabidopsis thalianasp|O82353|ATL67_ARATH RING-H2 finger protein ATL6745.100%Swiss-ProtMedium
P0CH02Arabidopsis thalianasp|P0CH02|AT21B_ARATH Putative RING-H2 finger protein ATL21B41.000%Swiss-ProtLow
Q9M313Arabidopsis thalianasp|Q9M313|ATL68_ARATH RING-H2 finger protein ATL6843.500%Swiss-ProtMedium

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