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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G530880
Reference: TK1151 Chr: Chr02 Coordinates: 136883607-136884715 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

792 bp · TkA02G530880|TK1151|cDNA

ATGGATCCTGCCCTTGCACACCAAGCCACCGCCACCGCACCGCCACCGCCACCGCCGGAGGTCTTGATCATAATGATGCCAAAAGATCCCACCAATATCATCGTGAAAGGAAAACGTACAAAGCGACAAAGGCTACAGCCCTCCTCTATTCCTTTCGCAATCGTATCTCATTCTTCCAACTCCTATAATGCTCTCAATTCTTTATCTCCGGCATCGTCTTCTGAATTTCCGGCCGGTAGCACCACCACGGAAGACGAAGA...

CDS

Download CDS FASTA

792 bp · TkA02G530880|TK1151|CDS

ATGGATCCTGCCCTTGCACACCAAGCCACCGCCACCGCACCGCCACCGCCACCGCCGGAGGTCTTGATCATAATGATGCCAAAAGATCCCACCAATATCATCGTGAAAGGAAAACGTACAAAGCGACAAAGGCTACAGCCCTCCTCTATTCCTTTCGCAATCGTATCTCATTCTTCCAACTCCTATAATGCTCTCAATTCTTTATCTCCGGCATCGTCTTCTGAATTTCCGGCCGGTAGCACCACCACGGAAGACGAAGA...

Protein

Download Protein FASTA

263 aa · TkA02G530880|TK1151|PROTEIN

MDPALAHQATATAPPPPPPEVLIIMMPKDPTNIIVKGKRTKRQRLQPSSIPFAIVSHSSNSYNALNSLSPASSSEFPAGSTTTEDEDTAKCLILLSKVPPYAALSDEDEPLMQFPAKKNISSSSSSLSVQLNSKNRPPISFTNAQSVERNSIPGKHWAGHMRRHRVTNGTSTAVTATNTTLSLIPYSPVTSMVVDDQDYRKSRNDGLCLNLDLNLPAPPETAANQDQHRESSFKFTADQNKQQPAVHLSATPNIGGLSLL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G530880
TK1151 IDTkA02G530880
OH-1004 IDLXL04_012912
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)64.300
Protein coverage (%)TK1151 96.578 / OH-1004 98.529
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G530880
LocationChr02:136883607-136884715 (+)
DescriptionSimilar to ZAT5: Zinc finger protein ZAT5
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012912 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0006950 response to stress Biological Process
GO:0006979 response to oxidative stress Biological Process
GO:0009408 response to heat Biological Process
GO:0009409 response to cold Biological Process
GO:0009416 response to light stimulus Biological Process
GO:0009611 response to wounding Biological Process
GO:0009617 response to bacterium Biological Process
GO:0009631 cold acclimation Biological Process
GO:0009643 photosynthetic acclimation Biological Process
GO:0010200 response to chitin Biological Process
KEGG gene cross-reference
ath:AT2G28200
ath:AT2G37430
ath:AT3G46080
ath:AT3G46090
ath:AT5G59820
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.964
Rank 1 · TkA02G530880 · TK1151
Cytoplasm0.101
Rank 2 · TkA02G530880 · TK1151
Cell membrane0.035
Rank 3 · TkA02G530880 · TK1151
Endoplasmic reticulum0.025
Rank 4 · TkA02G530880 · TK1151
Plastid0.014
Rank 5 · TkA02G530880 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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