TkA02G529080 | RubberDandelionOmics

Gene overview

TkA02G529080

Reference: TK1151 Chr: Chr02 Coordinates: 136450385-136454048 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1588 bp · TkA02G529080|TK1151|cDNA

CCGTCCCTAAAAGTCACTTTTCTTGTAGTGTAAAGAATCTTCGCTCTATACTTTATACGTCCTCTGATACTCTATAAGTTGGTGTTGTGCTAGCTAGCTAGCTAGTGTCTAAGATCTTTTGCGATTGAGTCGGTGTTTTCTTGGTGTTGACATGGCTCCAATGGTGTTGAAAACGTCATTCAAAGGCTTGTTCATCATGACATCATGCACCTTGATTACTTTAAAAGTAACCTTCTTTTTCATAACATCTATTCCTTCAA...

CDS

Download CDS FASTA

1491 bp · TkA02G529080|TK1151|CDS

ATGGCTCCAATGGTGTTGAAAACGTCATTCAAAGGCTTGTTCATCATGACATCATGCACCTTGATTACTTTAAAAGTAACCTTCTTTTTCATAACATCTATTCCTTCAACCTCAAAACTGATGATACACGAGCATGATGATCATCAGTTTGATATGAAACCCCCAGTTGATCTATCAGCCAAAATCTATAATCCTCACATGATCTCAACTCATCGCCAATATGAACAGCCGACGACCTCCACCCATGTTGGTGGAGTACT...

Protein

Download Protein FASTA

496 aa · TkA02G529080|TK1151|PROTEIN

MAPMVLKTSFKGLFIMTSCTLITLKVTFFFITSIPSTSKLMIHEHDDHQFDMKPPVDLSAKIYNPHMISTHRQYEQPTTSTHVGGVLQPGDGSIGGGSSPEVTGTRQWQKGGGKLPNMVKTSEAVVHQGGQPSGGSSMSSIKGFLNDNEVYHDKDIFMENYKQMNRSLKIYIYQHQKTDPYANVLLPNTRSLPGGNYASESYFKIVLSRSHFITQNASEADLFFLPFSIASMRADKRIGIDGIKNFVKDYISTIRRKYPF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G529080`
TK1151 ID	TkA02G529080
OH-1004 ID	LXL04_012932
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G529080

Location Chr02:136450385-136454048 (+)

Description Similar to At5g03795: Probable glycosyltransferase At5g03795

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g03795`	May be involved in cell wall biosynthesis.	No verified direct reference in this release
`UniProt: Q9LFP3`	May be involved in cell wall biosynthesis.	No verified direct reference in this release
`At3g07620`	May be involved in cell wall biosynthesis.	No verified direct reference in this release
`At3g42180`	May be involved in cell wall biosynthesis.	No verified direct reference in this release
`At5g20260`	May be involved in cell wall biosynthesis.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0107900`	Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012932 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009101 glycoprotein biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0016757 glycosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT3G42180

ath:AT5G03795

ath:AT5G11130

ath:AT5G20260

ath:AT5G25310

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.836

Rank 1 · TkA02G529080 · TK1151

Endoplasmic reticulum0.063

Rank 2 · TkA02G529080 · TK1151

Cell membrane0.060

Rank 3 · TkA02G529080 · TK1151

Extracellular0.041

Rank 4 · TkA02G529080 · TK1151

Cytoplasm0.033

Rank 5 · TkA02G529080 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03016Exostosin_GT47165-442 aa

PF24785RXYLT1_C365-408 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G529080	`PF03016`	Exostosin_GT47	165	442	6e-64	216.9
TkA02G529080	`PF24785`	RXYLT1_C	365	408	0.022	14.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FFN2`	Arabidopsis thaliana	sp\|Q9FFN2\|GLYT3_ARATH Probable glycosyltransferase At5g03795	35.500%	Swiss-Prot	Medium
`Q9LFP3`	Arabidopsis thaliana	sp\|Q9LFP3\|GLYT4_ARATH Probable glycosyltransferase At5g11130	32.500%	Swiss-Prot	Medium
`Q9SSE8`	Arabidopsis thaliana	sp\|Q9SSE8\|GLYT1_ARATH Probable glycosyltransferase At3g07620	30.400%	Swiss-Prot	Medium
`Q3EAR7`	Arabidopsis thaliana	sp\|Q3EAR7\|GLYT2_ARATH Probable glycosyltransferase At3g42180	30.100%	Swiss-Prot	Medium
`Q3E9A4`	Arabidopsis thaliana	sp\|Q3E9A4\|GLYT5_ARATH Probable glycosyltransferase At5g20260	33.100%	Swiss-Prot	Medium
`Q10SX7`	Oryza sativa subsp. japonica	sp\|Q10SX7\|GT31_ORYSJ Probable glucuronosyltransferase Os03g0107900	23.900%	Swiss-Prot	Low

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