TkA02G528090 | RubberDandelionOmics

Gene overview

TkA02G528090

Reference: TK1151 Chr: Chr02 Coordinates: 136188538-136199270 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2190 bp · TkA02G528090|TK1151|cDNA

ATATTATTGCTAGCATGCTTGGTAATCCTTTGGCGGTTGATAGTTGTACAGCAAGGATGTGTATGAATGCTTCCGCTGGAAACCAGATAAGTGTTCTTTTTGCAAGGTGTTTGACCAGTCTGATAGCAATTGCATTCAACATAATGAGTATTAGTGTTGAAGTAATTGTCTTTTTTTTTCCAGATAAGGTTGAAGAAAGAACAAAAAAAGAGGGAGGAGAAGAGAAGATATCAGGCAAATCCTCATCTGTACACTATTAT...

CDS

Download CDS FASTA

2520 bp · TkA02G528090|TK1151|CDS

ATGGAAGGTGGTGTCCCTGATCAGCAAAAAGAGGCGGGAAAAAATTTCGCGGCCAAGAGAATCGTCATTGCCCCCCGCACTGTGACAGTGGGATTTGGGGACGGTACTGCTGGAGCGTTGAACGCCATTAGAACCGGTGAAGGCGAGAAAAATAGTTTTGATAGCCGGAAAGCTTGTATCTCGAAGGCACCGGGTGAAAACCTAAGCTGCAACGATTTACAGCTTGAATATGTGAAGCCTGTTATTAATAATGTGAATGG...

Protein

Download Protein FASTA

839 aa · TkA02G528090|TK1151|PROTEIN

MEGGVPDQQKEAGKNFAAKRIVIAPRTVTVGFGDGTAGALNAIRTGEGEKNSFDSRKACISKAPGENLSCNDLQLEYVKPVINNVNGSVIIPSDVVNRGSIPYSRTLYGYFFEEKEIDFSLINSNFRNMWKIHGIEDIMVNDKGFYFFKFNSDEGMLDALEHGPWTISNSNSPIFLKRWSPGLILDKLKLPVWIRIYDMPLELWNKNGLNIIASMLGNPLAVDSCTARMCMNASGRAGYARVLVDFEATGKWPDEISVSV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G528090`
TK1151 ID	TkA02G528090
OH-1004 ID	LXL04_012934
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	81.700
Protein coverage (%)	TK1151 94.279 / OH-1004 42.292 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G528090

Location Chr02:136188538-136199270 (-)

Description Similar to UBP12: Ubiquitin carboxyl-terminal hydrolase 12

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g06600`	Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin.	No verified direct reference in this release
`At3g11910`	Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin.	No verified direct reference in this release
`At3g58250`	MATH domain and coiled-coil domain-containing protein At3g58250.	No verified direct reference in this release
`At3g58410`	MATH domain and coiled-coil domain-containing protein At3g58410.	No verified direct reference in this release
`At3g58370`	MATH domain and coiled-coil domain-containing protein At3g58370.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012934 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0009867 jasmonic acid mediated signaling pathway Biological Process

GO:0010078 maintenance of root meristem identity Biological Process

GO:0016579 protein deubiquitination Biological Process

GO:0031647 regulation of protein stability Biological Process

GO:0070646 protein modification by small protein removal Biological Process

GO:2000280 regulation of root development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0004843 cysteine-type deubiquitinase activity Molecular Function

KEGG gene cross-reference

ath:AT3G11910

ath:AT5G06600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.479

Rank 1 · TkA02G528090 · TK1151

Nucleus0.364

Rank 2 · TkA02G528090 · TK1151

Cell membrane0.139

Rank 3 · TkA02G528090 · TK1151

Endoplasmic reticulum0.077

Rank 4 · TkA02G528090 · TK1151

Mitochondrion0.054

Rank 5 · TkA02G528090 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14111DUF4283105-184 aa

PF10723RepB-RCR_reg306-315 aa

PF14533USP7_C2342-380 aa

PF12436USP7_ICP0_bdg381-632 aa

PF10723RepB-RCR_reg389-432 aa

PF22486MATH_2440-457 aa

PF14533USP7_C2465-498 aa

PF22486MATH_2648-771 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G528090	`PF14111`	DUF4283	105	184	9.3e-12	45.2
TkA02G528090	`PF10723`	RepB-RCR_reg	306	315	2.3	9.0
TkA02G528090	`PF14533`	USP7_C2	342	380	3.9e-05	24.2
TkA02G528090	`PF12436`	USP7_ICP0_bdg	381	632	1.8e-73	247.6
TkA02G528090	`PF10723`	RepB-RCR_reg	389	432	2.3	9.0
TkA02G528090	`PF22486`	MATH_2	440	457	5e-38	131.1
TkA02G528090	`PF14533`	USP7_C2	465	498	3.9e-05	24.2
TkA02G528090	`PF22486`	MATH_2	648	771	5e-38	131.1
TkA02G528090	`PF00917`	MATH	653	772	2.1e-17	64.1
TkA02G528090	`PF14533`	USP7_C2	791	822	3.9e-05	24.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FPT1`	Arabidopsis thaliana	sp\|Q9FPT1\|UBP12_ARATH Ubiquitin C-terminal hydrolase 12	49.200%	Swiss-Prot	Medium
`Q84WU2`	Arabidopsis thaliana	sp\|Q84WU2\|UBP13_ARATH Ubiquitin C-terminal hydrolase 13	63.200%	Swiss-Prot	Low
`Q9M2J1`	Arabidopsis thaliana	sp\|Q9M2J1\|MCC19_ARATH MATH domain and coiled-coil domain-containing protein At3g58250	49.600%	Swiss-Prot	Low
`Q9M2H5`	Arabidopsis thaliana	sp\|Q9M2H5\|MCC29_ARATH MATH domain and coiled-coil domain-containing protein At3g58410	44.400%	Swiss-Prot	Low
`Q9M2H9`	Arabidopsis thaliana	sp\|Q9M2H9\|MCC26_ARATH MATH domain and coiled-coil domain-containing protein At3g58370	44.200%	Swiss-Prot	Low

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