Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2053 bp · TkA02G525890|TK1151|cDNA
CCCAAATCATGATTTCCCAATTCAGTTTGTCTAGGGTTTATACACATCTTGAATTTGTTTAGTTTTTCTTCCTGGATTTCGGTCTCATTTAAATACTTTGGAAACATCCAGTGTTCTCTTTATCTGTCTTTGCTAGAGAATCTCAATACTTGTTGCGTCCTAGCTAATTTGCTTTGATTTACGACAGTTATGACCTAGTTGTCCCTCTTAATCTCGAATGTTTCTAGTAATTGGCGCATGATTGCTTCGGAGTTATTGTA...
1614 bp · TkA02G525890|TK1151|CDS
ATGAAGAACGAAAACGAGGATCAGAAAATGTTATCAGCACCAGATTCTGTAGAAACTTCAGTCTCTCCTTCAGCTGATGATGTGAAGCAATATAGTTCTCAACAAAGAGAAGCATTACCAGGAGAGCCTCAATGCATACAATGTGGACGCTATGGAGAATACATATGTAATGAAACTGATGATGATATATGCAGCCTTGAATGCAAGCAAAACCTCTTACATAAAATCAAAGAACCTAAATTACCAACCACTCTCCCACT...
Protein
Download Protein FASTA537 aa · TkA02G525890|TK1151|PROTEIN
MKNENEDQKMLSAPDSVETSVSPSADDVKQYSSQQREALPGEPQCIQCGRYGEYICNETDDDICSLECKQNLLHKIKEPKLPTTLPLPSIRLPANDECFYVTDGNKNSKSEAQSLTTKQIESIRLKFQINVKTSTFIPPPMLSFSHCNLPQKLLQNIESAGYEIPTPVQMQAIPAALKGQSLLVSSETGSGKTASYLIPAISFCSNFRKEPKNPLVIVLTPTRELSIQVEQQAKILAKGLPFKTALVVGGDAMPRQIHRI...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA02G525890 |
|---|---|
| TK1151 ID | TkA02G525890 |
| OH-1004 ID | LXL04_012968 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 98.900 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA02G525890 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:135639840-135642233 (-) | ||||||||||||
| Description | Similar to RH41: DEAD-box ATP-dependent RNA helicase 41 | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
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| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005737 cytoplasm Cellular Component GO:0009507 chloroplast Cellular Component GO:0003724 RNA helicase activity Molecular Function GO:0003729 mRNA binding Molecular Function GO:0005524 ATP binding Molecular Function GO:0008270 zinc ion binding Molecular Function GO:0016887 ATP hydrolysis activity Molecular Function | ||||||||||||
| KEGG gene cross-reference | ath:AT3G02065 dosa:Os02g0201900 hsa:83479 mmu:67997 rno:289402 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF04438zf-HIT43-69 aaPF00270DEAD166-333 aaPF04851ResIII166-327 aaPF00004AAA183-194 aaPF00271Helicase_C210-246 aaPF00004AAA266-308 aaPF00271Helicase_C310-359 aaPF00004AAA332-392 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA02G525890 | PF04438 | zf-HIT | 43 | 69 | 2e-05 | 24.9 |
| TkA02G525890 | PF00270 | DEAD | 166 | 333 | 5.2e-43 | 147.4 |
| TkA02G525890 | PF04851 | ResIII | 166 | 327 | 3.4e-06 | 27.8 |
| TkA02G525890 | PF00004 | AAA | 183 | 194 | 0.18 | 12.9 |
| TkA02G525890 | PF00271 | Helicase_C | 210 | 246 | 2e-21 | 77.0 |
| TkA02G525890 | PF00004 | AAA | 266 | 308 | 0.18 | 12.9 |
| TkA02G525890 | PF00271 | Helicase_C | 310 | 359 | 2e-21 | 77.0 |
| TkA02G525890 | PF00004 | AAA | 332 | 392 | 0.18 | 12.9 |
| TkA02G525890 | PF04851 | ResIII | 342 | 361 | 3.4e-06 | 27.8 |
| TkA02G525890 | PF21090 | P-loop_SecA | 363 | 457 | 0.037 | 14.4 |
| TkA02G525890 | PF00271 | Helicase_C | 371 | 482 | 2e-21 | 77.0 |
| TkA02G525890 | PF00270 | DEAD | 406 | 444 | 5.2e-43 | 147.4 |
| TkA02G525890 | PF00004 | AAA | 460 | 495 | 0.18 | 12.9 |
| TkA02G525890 | PF21090 | P-loop_SecA | 475 | 496 | 0.037 | 14.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.