TkA02G525650 | RubberDandelionOmics

Gene overview

TkA02G525650

Reference: TK1151 Chr: Chr02 Coordinates: 135574826-135576515 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1592 bp · TkA02G525650|TK1151|cDNA

ATAACGATGAGTGCACCATGGATTTCTATTTCTTTATTCATCTTAACAATCATCATCGTAAATTACTACTCAGCCACAGCCCAACCCCCTTTCGATTACCCAAATGCGAATCTTTCCACAACATGGACCAACACCGAATCTCTACCTCACTCCGTCAATTTCACCGATGGCTCAGTGGTCCGAGCCATCCTCCTTAGAGGATCATTCGGACCCAAATTCGCATGTGGATTCTACTGTAACGGAACCTGCACATCTTACCT...

CDS

Download CDS FASTA

1419 bp · TkA02G525650|TK1151|CDS

ATGAGTGCACCATGGATTTCTATTTCTTTATTCATCTTAACAATCATCATCGTAAATTACTACTCAGCCACAGCCCAACCCCCTTTCGATTACCCAAATGCGAATCTTTCCACAACATGGACCAACACCGAATCTCTACCTCACTCCGTCAATTTCACCGATGGCTCAGTGGTCCGAGCCATCCTCCTTAGAGGATCATTCGGACCCAAATTCGCATGTGGATTCTACTGTAACGGAACCTGCACATCTTACCTCTTCGC...

Protein

Download Protein FASTA

472 aa · TkA02G525650|TK1151|PROTEIN

MSAPWISISLFILTIIIVNYYSATAQPPFDYPNANLSTTWTNTESLPHSVNFTDGSVVRAILLRGSFGPKFACGFYCNGTCTSYLFAVFIVQTNSGGGIVQPSFGFPQVVWSANRDSPVSYGAILNLTATGDLVLQDANGSAIWSTNTSGKSVVGMNLTDNGNLQLFDVNSSVLWQSFDNPTDCLVPGQNLFQGQQLIPSYSSTNWTAQKDLFSLRVTEKGLFAYVGSNPPQEYYSMSAFRNDTDKGRRYVRYLNGSLSL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G525650`
TK1151 ID	TkA02G525650
OH-1004 ID	LXL04_012974
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	96.400
Protein coverage (%)	TK1151 87.500 / OH-1004 46.825 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G525650

Location Chr02:135574826-135576515 (+)

Description Similar to SD25: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g24080`	G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080.	No verified direct reference in this release
`At5g60900`	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1.	No verified direct reference in this release
`At4g21370`	Truncated and inactivated form of SRK, the female specificity determinant of self-incompatibility when active.	No verified direct reference in this release
`UniProt: P0DH86`	Female specificity determinant of self-incompatibility.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012974 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0046777 protein autophosphorylation Biological Process

GO:0048544 recognition of pollen Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005516 calmodulin binding Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0030246 carbohydrate binding Molecular Function

GO:0031625 ubiquitin protein ligase binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G34300

ath:AT2G19130

ath:AT4G32300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.413

Rank 1 · TkA02G525650 · TK1151

Cell membrane0.312

Rank 2 · TkA02G525650 · TK1151

Endoplasmic reticulum0.121

Rank 3 · TkA02G525650 · TK1151

Cytoplasm0.079

Rank 4 · TkA02G525650 · TK1151

Lysosome / Vacuole0.039

Rank 5 · TkA02G525650 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08276PAN_278-84 aa

PF01453B_lectin109-193 aa

PF01453B_lectin277-297 aa

PF00024PAN_1331-346 aa

PF08276PAN_2332-343 aa

PF08276PAN_2369-424 aa

PF00024PAN_1392-426 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G525650	`PF08276`	PAN_2	78	84	0.00051	20.8
TkA02G525650	`PF01453`	B_lectin	109	193	1e-19	71.7
TkA02G525650	`PF01453`	B_lectin	277	297	1e-19	71.7
TkA02G525650	`PF00024`	PAN_1	331	346	0.033	14.8
TkA02G525650	`PF08276`	PAN_2	332	343	0.00051	20.8
TkA02G525650	`PF08276`	PAN_2	369	424	0.00051	20.8
TkA02G525650	`PF00024`	PAN_1	392	426	0.033	14.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FLV4`	Arabidopsis thaliana	sp\|Q9FLV4\|Y5248_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080	25.700%	Swiss-Prot	Low
`Q39202`	Arabidopsis thaliana	sp\|Q39202\|RLK1_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	24.400%	Swiss-Prot	Low
`P0DH87`	Arabidopsis thaliana	sp\|P0DH87\|PSRK_ARATH Putative inactive G-type lectin S-receptor-like serine/threonine-protein kinase SRK	22.600%	Swiss-Prot	Low
`P0DH86`	Arabidopsis thaliana	sp\|P0DH86\|SRK_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SRK	22.600%	Swiss-Prot	Low

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