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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G523980
Reference: TK1151 Chr: Chr02 Coordinates: 135112561-135120181 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1751 bp · TkA02G523980|TK1151|cDNA

ATCTCCACCACCTCCTTATGTATACAAGTCCCCACATCCTCCGTCACCATCTCCACCACCTTCATACATTTACAAATCTCCCCCTCCACCATCACCATCACCACCTCCTCCTTATATCTACAAGTCTCCTCCCCCACCATCACCATCCCCACCTCCTCCATATATCTACAAATCTCCTCCTCCACCATCACCATCCCCACCTCCTCCATACATCTACAAATCCCCACCTCCACCATCACCATTGCCACCACGTTCGTACA...

CDS

Download CDS FASTA

1659 bp · TkA02G523980|TK1151|CDS

ATGTATACAAGTCCCCACATCCTCCGTCACCATCTCCACCACCTTCATACATTTACAAATCTCCCCCTCCACCATCACCATCACCACCTCCTCCTTATATCTACAAGTCTCCTCCCCCACCATCACCATCCCCACCTCCTCCATATATCTACAAATCTCCTCCTCCACCATCACCATCCCCACCTCCTCCATACATCTACAAATCCCCACCTCCACCATCACCATTGCCACCACGTTCGTACATTTACAAATCTCCTCCC...

Protein

Download Protein FASTA

552 aa · TkA02G523980|TK1151|PROTEIN

MYTSPHILRHHLHHLHTFTNLPLHHHHHHLLLISTSLLPHHHHPHLLHISTNLLLHHHHPHLLHTSTNPHLHHHHCHHVRTFTNLLPSHHIYCHVRITINHHRHLQSLPELQGIIKSQTSFIAIAEKSYAYNSPLPKNWKMPPPMKYPLRKSPYVYKSPPTPVKHTWPHLPYLHKSPPPSYIYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYIYKSPPPPSPSPPPPYVYKSPPPPSPSPRPPYVYKSPPPPSPSPPPP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G523980
TK1151 IDTkA02G523980
OH-1004 IDLXL04_013001
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)97.500
Protein coverage (%)TK1151 7.246 / OH-1004 3.891
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G523980
LocationChr02:135112561-135120181 (-)
DescriptionProtein of unknown function
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_013001 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0043484 regulation of RNA splicing Biological Process
GO:0005654 nucleoplasm Cellular Component
GO:1990904 ribonucleoprotein complex Cellular Component
GO:0003723 RNA binding Molecular Function
KEGG gene cross-reference
hsa:389677
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.800
Rank 1 · TkA02G523980 · TK1151
Cytoplasm0.062
Rank 2 · TkA02G523980 · TK1151
Nucleus0.052
Rank 3 · TkA02G523980 · TK1151
Endoplasmic reticulum0.036
Rank 4 · TkA02G523980 · TK1151
Cell membrane0.035
Rank 5 · TkA02G523980 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04554Extensin_2127-148 aa
PF04554Extensin_2154-205 aa
PF04554Extensin_2207-253 aa
PF04554Extensin_2225-269 aa
PF04554Extensin_2257-300 aa
PF04554Extensin_2273-317 aa
PF04554Extensin_2309-365 aa
PF04554Extensin_2336-381 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G523980PF04554Extensin_21271482.6e-1660.2
TkA02G523980PF04554Extensin_21542052.6e-1660.2
TkA02G523980PF04554Extensin_22072532.6e-1660.2
TkA02G523980PF04554Extensin_22252692.6e-1660.2
TkA02G523980PF04554Extensin_22573002.6e-1660.2
TkA02G523980PF04554Extensin_22733172.6e-1660.2
TkA02G523980PF04554Extensin_23093652.6e-1660.2
TkA02G523980PF04554Extensin_23363812.6e-1660.2
TkA02G523980PF04554Extensin_23744292.6e-1660.2
TkA02G523980PF04554Extensin_24494772.6e-1660.2
TkA02G523980PF04554Extensin_24815102.6e-1660.2
TkA02G523980PF04554Extensin_25025512.6e-1660.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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