RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G523320
Reference: TK1151 Chr: Chr02 Coordinates: 134953535-134955905 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1518 bp · TkA02G523320|TK1151|cDNA

ATGCAGAACTCACGAAAAGGGTGTACATTTGGACTTGGGAAAATAGGGACAAAAATAATCCCAGAGCATGTGAGGTGTCACAAACAAACTGAACTTGAAAAGGCAAAAGCAACACTTCTGCTAGCAACTTTGCCTAAATCTTTACCTTGTAGAAACAAAGAGATGGAAGAAATAACTACATTTATCAAAGGTGCTATATGTGATGATCAGTGTCTAGGTCGGTGTCTTTACATCCATGGTGTTCCTGGAACGGGCAAGAC...

CDS

Download CDS FASTA

1281 bp · TkA02G523320|TK1151|CDS

ATGCAGAACTCACGAAAAGGGTGTACATTTGGACTTGGGAAAATAGGGACAAAAATAATCCCAGAGCATGTGAGGTGTCACAAACAAACTGAACTTGAAAAGGCAAAAGCAACACTTCTGCTAGCAACTTTGCCTAAATCTTTACCTTGTAGAAACAAAGAGATGGAAGAAATAACTACATTTATCAAAGGTGCTATATGTGATGATCAGTGTCTAGGTCGGTGTCTTTACATCCATGGTGTTCCTGGAACGGGCAAGAC...

Protein

Download Protein FASTA

426 aa · TkA02G523320|TK1151|PROTEIN

MQNSRKGCTFGLGKIGTKIIPEHVRCHKQTELEKAKATLLLATLPKSLPCRNKEMEEITTFIKGAICDDQCLGRCLYIHGVPGTGKTMSVLSVMRSLRSEVDAAGVTKPYSFVEINGLKLATPENIYRVIYEALTGHRVSWKKALNLLTDKFTNGVKSSKDDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPNSKLIIIGIANTMDLPEKLLPRISSRMGIQRLCFAPYNYMQLQEIIGCRLKGIDAFEKQAIEFASR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G523320
TK1151 IDTkA02G523320
OH-1004 IDLXL04_013008
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)98.800
Protein coverage (%)TK1151 99.531 / OH-1004 49.474
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G523320
LocationChr02:134953535-134955905 (+)
DescriptionSimilar to ORC1A: Origin of replication complex subunit 1A
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g12620 Essential protein required for ovules fertilization. No verified direct reference in this release
At4g14700 Essential protein. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os06g0187000 Essential protein (By similarity).
Molecular cloning and characterization of a plant homologue of the origin recognition complex 1 (ORC1).2000 · DOI: 10.1016/s0168-9452(00)00297-1
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_013008 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006260 DNA replication Biological Process
GO:0006270 DNA replication initiation Biological Process
GO:0006277 DNA amplification Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0009567 double fertilization forming a zygote and endosperm Biological Process
GO:0009744 response to sucrose Biological Process
GO:0033314 mitotic DNA replication checkpoint signaling Biological Process
GO:0000781 chromosome, telomeric region Cellular Component
GO:0000808 origin recognition complex Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
KEGG gene cross-reference
ath:AT4G12620
ath:AT4G14700
dme:Dmel_CG10667
dosa:Os06g0187000
hsa:4998
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.790
Rank 1 · TkA02G523320 · TK1151
Cytoplasm0.226
Rank 2 · TkA02G523320 · TK1151
Mitochondrion0.055
Rank 3 · TkA02G523320 · TK1151
Cell membrane0.028
Rank 4 · TkA02G523320 · TK1151
Endoplasmic reticulum0.016
Rank 5 · TkA02G523320 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13191AAA_1648-193 aa
PF06068TIP4959-102 aa
PF07088GvpD_P-loop70-104 aa
PF13245AAA_1971-202 aa
PF24883NPHP3_N73-175 aa
PF13401AAA_2274-202 aa
PF09848SLFN-g3_helicase75-181 aa
PF25201nSTAND675-181 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G523320PF13191AAA_16481936e-1040.6
TkA02G523320PF06068TIP49591020.1112.4
TkA02G523320PF07088GvpD_P-loop701040.02515.2
TkA02G523320PF13245AAA_19712020.003318.3
TkA02G523320PF24883NPHP3_N731751.7e-0525.8
TkA02G523320PF13401AAA_22742028.6e-1143.0
TkA02G523320PF09848SLFN-g3_helicase751810.0004420.4
TkA02G523320PF25201nSTAND6751810.04814.4
TkA02G523320PF05729NACHT761910.03214.8
TkA02G523320PF13086AAA_1176990.1112.9
TkA02G523320PF00004AAA772235.8e-1866.3
TkA02G523320PF01443Viral_helicase177990.07513.6
TkA02G523320PF22606Cdc6-ORC-like_ATPase_lid2312843.4e-0834.0
TkA02G523320PF22703Cdc6_lid2492921.2e-0525.8
TkA02G523320PF17872AAA_lid_102512864.5e-1143.5
TkA02G523320PF00004AAA3023165.8e-1866.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SU24Arabidopsis thalianasp|Q9SU24|ORC1B_ARATH Origin of replication complex subunit 1B75.600%Swiss-ProtHigh
Q710E8Arabidopsis thalianasp|Q710E8|ORC1A_ARATH Origin of replication complex subunit 1A75.000%Swiss-ProtHigh
Q5SMU7Oryza sativa subsp. japonicasp|Q5SMU7|ORC1_ORYSJ Origin of replication complex subunit 173.900%Swiss-ProtHigh

JBrowse

View in Genome Browser