TkA02G518590 | RubberDandelionOmics

Gene overview

TkA02G518590

Reference: TK1151 Chr: Chr02 Coordinates: 133645177-133646266 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

912 bp · TkA02G518590|TK1151|cDNA

ATTGGGGGCCCAAAGTTCTCTTTTGAGTTTCTTAATCTTACAACCCAACAAGCAATCAGCAATCGTAAGCGGCTGCGGCTCTAGGCTGAAAGCAGTAGTGGTGGAGTGGTGGTTGCAGACGATTAGGACGACTGGAAGAGGCCGGAGAACATCCAGTAACTCATATCAGTTGTGATTCCAGAAACAAACGTCTTCAAAACGAAATTGTCTCCCGCCGCCCTTTCCATCATTACGGAAGCAATGGTCCAAATCCGAACGGT...

CDS

Download CDS FASTA

378 bp · TkA02G518590|TK1151|CDS

ATGACTGTTTTAAAGAGATACGTGCTAAGGTTATTCATGTCACTGAAATACGTTACTGCAAACATAGTGGACAGAAACAATGGCAGAATAGTTGCAACAGCTTCAACAGTTGAACAGTCTATAAAAACATCACTCGAGTGTGGTAGAACATGCAATGCAAAAGCTGCAACAGTTGTGGGCGAGGTGTTGGCTATGAGGCTCAAGGTGGAGGGTCTTGAATCTGGGCAAGGAAGAGGCATTCATGTCGATGTGAACAAAGA...

Protein

Download Protein FASTA

125 aa · TkA02G518590|TK1151|PROTEIN

MTVLKRYVLRLFMSLKYVTANIVDRNNGRIVATASTVEQSIKTSLECGRTCNAKAATVVGEVLAMRLKVEGLESGQGRGIHVDVNKELEKKDFKNRTKVWAVINSLKNNGVKLILDQHNDTSKPG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G518590`
TK1151 ID	TkA02G518590
OH-1004 ID	LXL04_002764
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	95.200
Protein coverage (%)	TK1151 99.200 / OH-1004 99.200 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA02G518590`
Location	Chr02:133645177-133646266 (-)
Description	Similar to rplR: 50S ribosomal protein L18 (Aromatoleum aromaticum (strain EbN1)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_002764` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006412 translation Biological Process GO:0022625 cytosolic large ribosomal subunit Cellular Component GO:0003735 structural constituent of ribosome Molecular Function GO:0008097 5S rRNA binding Molecular Function
KEGG gene cross-reference	dth:DICTH_0853 dtu:Dtur_0997 eba:ebB130 par:Psyc_0505 pcr:Pcryo_0500 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.510

Rank 1 · TkA02G518590 · TK1151

Nucleus0.383

Rank 2 · TkA02G518590 · TK1151

Mitochondrion0.099

Rank 3 · TkA02G518590 · TK1151

Plastid0.027

Rank 4 · TkA02G518590 · TK1151

Endoplasmic reticulum0.024

Rank 5 · TkA02G518590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00861Ribosomal_L18p5-73 aa

PF05949DUF8818-39 aa

PF05949DUF88169-113 aa

PF00150Cellulase90-120 aa

PF00861Ribosomal_L18p98-108 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G518590	`PF00861`	Ribosomal_L18p	5	73	1.9e-08	35.4
TkA02G518590	`PF05949`	DUF881	8	39	0.066	13.8
TkA02G518590	`PF05949`	DUF881	69	113	0.066	13.8
TkA02G518590	`PF00150`	Cellulase	90	120	0.11	12.8
TkA02G518590	`PF00861`	Ribosomal_L18p	98	108	1.9e-08	35.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser

Gene Card