TkA02G516390 | RubberDandelionOmics

Gene overview

TkA02G516390

Reference: TK1151 Chr: Chr02 Coordinates: 133053576-133055751 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1670 bp · TkA02G516390|TK1151|cDNA

CCCAGATATCAAGTTTCAGGAAGCCCACTTAATTACCAAACAAATGCTAGGGTTTATGGTTTGTAGCACCGAGTCACTCACTGTCAGTGACAGGTTCATCAGATTTTAGCTGGTAGTTGTATGTATAATCTATTGTTTCATCACTTGATTTTAATTTCGGAAGCTTTCAGTTCGATATTTGAGCTAAAAGTTTTTCTGCAGAGGTTTAAAAAATATCATCTTCTAATCATACATTCTCCAGTTTGAGATTGTTCCCGTGT...

CDS

Download CDS FASTA

1254 bp · TkA02G516390|TK1151|CDS

ATGGCGCTTTCTTCATCAGGTTTCTTCGCTGTGAGACTCGATGAATCATCAGACGTAAGTGAATCGATATCTAAAAATCGTAGCAAAACCATGACGAAGCAATCGATTAAAGCGAAGCGGTTACATAGAAATCGGGTTTCTAATTTATTGCGATACCCTATTTCAAGAACCTTTACCAGGATTGCGCATACAACCAAGTTAAAATCTGCTACATCCGACAATCTAGGAAAAACAGTCACGGTTGCAGAGGTTTTGGACAT...

Protein

Download Protein FASTA

417 aa · TkA02G516390|TK1151|PROTEIN

MALSSSGFFAVRLDESSDVSESISKNRSKTMTKQSIKAKRLHRNRVSNLLRYPISRTFTRIAHTTKLKSATSDNLGKTVTVAEVLDIKPDLESGGGDDGNGNSPPGNGGNGGGDEGGGNEEDHDEKEFGPLMKFEEVMKVAETQGVNLPSDMLEAAKATGLRKLILTRYMELQGSGWVLAFLMKYCGVLRNRMLADPSFLFKVGTEIVIDSCCATFAEVQKRGPDFWAEFELYAADLLVGIVVDIALVGMLAPYARIGKR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G516390`
TK1151 ID	TkA02G516390
OH-1004 ID	LXL04_013122
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G516390

Location Chr02:133053576-133055751 (-)

Description Similar to RER1: Protein RETICULATA-RELATED 1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g22790`	May play a role in leaf development.	Functional Redundancy and Divergence within the Arabidopsis RETICULATA-RELATED Gene Family.2013 · DOI: 10.1104/pp.113.217323
`At2g37860`	May play a role in leaf development.	The lower cell density of leaf parenchyma in the Arabidopsis thaliana mutant lcd1-1 is associated with increased sensitivity to ozone and virulent Pseudomonas syringae.2003 · DOI: 10.1046/j.1365-313x.2003.01795.x Mutations in the RETICULATA gene dramatically alter internal architecture but have little effect on overall organ shape in Arabidopsis leaves.2006 · DOI: 10.1093/jxb/erl063
`At5g12470`	May play a role in leaf development.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013122 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000302 response to reactive oxygen species Biological Process

GO:0009648 photoperiodism Biological Process

GO:0009658 chloroplast organization Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0015822 ornithine transport Biological Process

GO:0048366 leaf development Biological Process

GO:0099402 plant organ development Biological Process

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009706 chloroplast inner membrane Cellular Component

KEGG gene cross-reference

ath:AT2G37860

ath:AT3G08630

ath:AT3G08640

ath:AT5G12470

ath:AT5G22790

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.854

Rank 1 · TkA02G516390 · TK1151

Mitochondrion0.133

Rank 2 · TkA02G516390 · TK1151

Nucleus0.026

Rank 3 · TkA02G516390 · TK1151

Cytoplasm0.022

Rank 4 · TkA02G516390 · TK1151

Cell membrane0.011

Rank 5 · TkA02G516390 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF11891RETICULATA-like191-371 aa

PF11891RETICULATA-like389-409 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G516390	`PF11891`	RETICULATA-like	191	371	2.7e-64	216.9
TkA02G516390	`PF11891`	RETICULATA-like	389	409	2.7e-64	216.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FGP9`	Arabidopsis thaliana	sp\|Q9FGP9\|RER1_ARATH Protein RETICULATA-RELATED 1, chloroplastic	73.800%	Swiss-Prot	High
`B9DFK5`	Arabidopsis thaliana	sp\|B9DFK5\|RETIC_ARATH Protein RETICULATA, chloroplastic	71.600%	Swiss-Prot	High
`Q94CJ5`	Arabidopsis thaliana	sp\|Q94CJ5\|RER4_ARATH Protein RETICULATA-RELATED 4, chloroplastic	29.800%	Swiss-Prot	Low

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