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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G511250
Reference: TK1151 Chr: Chr02 Coordinates: 131276288-131277364 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

768 bp · TkA02G511250|TK1151|cDNA

ATGCGTCGAATCGGCGTTACCCCTGGTAAACACACATTCCCTTTTCTTCTCAAGGCGTGTTCCAACTTACAGTCGCTTAGATCCTGCAAACAAGTACATACCCAAGTAATAAAATTCGGGTTAGACCTGGATTCACGTACTGCTTTAGTCAACATGTACGCCAAAAATGGCGCACTTCTCATGGCTCAAAATTGCTTCAATAACATGCCTCAAAAAAACATTGTAACATGGAACGCCATGATTTCAGGATTGGCAGTTCA...

CDS

Download CDS FASTA

768 bp · TkA02G511250|TK1151|CDS

ATGCGTCGAATCGGCGTTACCCCTGGTAAACACACATTCCCTTTTCTTCTCAAGGCGTGTTCCAACTTACAGTCGCTTAGATCCTGCAAACAAGTACATACCCAAGTAATAAAATTCGGGTTAGACCTGGATTCACGTACTGCTTTAGTCAACATGTACGCCAAAAATGGCGCACTTCTCATGGCTCAAAATTGCTTCAATAACATGCCTCAAAAAAACATTGTAACATGGAACGCCATGATTTCAGGATTGGCAGTTCA...

Protein

Download Protein FASTA

255 aa · TkA02G511250|TK1151|PROTEIN

MRRIGVTPGKHTFPFLLKACSNLQSLRSCKQVHTQVIKFGLDLDSRTALVNMYAKNGALLMAQNCFNNMPQKNIVTWNAMISGLAVHGHAKEALKYFQDLEKHDVVPNDRTFVGVLSACCHAGMLEFGWSLFNSMKSVYGIDPKIQHYGCMVDLLGRGGRVLEAEELIKVMPWKADLKIWGALLSACGSHGNIEVGERVVKEMILLDPDNHGVYVVLSNMYAEVGRWEDVSRMRGIIKNGSLQKTPGWSLVGGGD

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G511250
TK1151 IDTkA02G511250
OH-1004 IDLXL04_013175
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)46.300
Protein coverage (%)TK1151 94.118 / OH-1004 37.060
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G511250
LocationChr02:131276288-131277364 (+)
DescriptionSimilar to PCMP-H34: Pentatricopeptide repeat-containing protein At3g26782, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g56310 Pentatricopeptide repeat-containing protein At5g56310. No verified direct reference in this release
At2g20540 Pentatricopeptide repeat-containing protein At2g20540. No verified direct reference in this release
At5g19020 Pentatricopeptide repeat-containing protein At5g19020, mitochondrial. No verified direct reference in this release
At5g43790 Pentatricopeptide repeat-containing protein At5g43790. No verified direct reference in this release
At3g26782 Pentatricopeptide repeat-containing protein At3g26782, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_013175 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G08070
ath:AT3G12770
ath:AT3G26782
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.720
Rank 1 · TkA02G511250 · TK1151
Plastid0.135
Rank 2 · TkA02G511250 · TK1151
Nucleus0.046
Rank 3 · TkA02G511250 · TK1151
Cytoplasm0.029
Rank 4 · TkA02G511250 · TK1151
Cell membrane0.005
Rank 5 · TkA02G511250 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_21-22 aa
PF13812PPR_31-21 aa
PF17177PPR_long1-54 aa
PF29070MSC6_N6-67 aa
PF01535PPR16-40 aa
PF13812PPR_345-71 aa
PF01535PPR47-74 aa
PF13041PPR_247-74 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G511250PF13041PPR_21221e-2383.9
TkA02G511250PF13812PPR_31211.1e-0835.7
TkA02G511250PF17177PPR_long1540.0002421.3
TkA02G511250PF29070MSC6_N6670.0001521.7
TkA02G511250PF01535PPR16403.2e-2999.8
TkA02G511250PF13812PPR_345711.1e-0835.7
TkA02G511250PF01535PPR47743.2e-2999.8
TkA02G511250PF13041PPR_247741e-2383.9
TkA02G511250PF12854PPR_147691.5e-1350.9
TkA02G511250PF20431E_motif48582.6e-1557.1
TkA02G511250PF13428TPR_1448570.01316.8
TkA02G511250PF13812PPR_3711191.1e-0835.7
TkA02G511250PF13041PPR_2721211e-2383.9
TkA02G511250PF12854PPR_173981.5e-1350.9
TkA02G511250PF01535PPR751043.2e-2999.8
TkA02G511250PF29070MSC6_N751690.0001521.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FMA1Arabidopsis thalianasp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g5631044.000%Swiss-ProtMedium
Q9SIL5Arabidopsis thalianasp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g2054041.100%Swiss-ProtMedium
P0C8Q8Arabidopsis thalianasp|P0C8Q8|PP394_ARATH Pentatricopeptide repeat-containing protein At5g19020, mitochondrial46.800%Swiss-ProtMedium
Q9FG85Arabidopsis thalianasp|Q9FG85|PP415_ARATH Pentatricopeptide repeat-containing protein At5g4379042.600%Swiss-ProtMedium
Q9LW32Arabidopsis thalianasp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782, mitochondrial45.600%Swiss-ProtMedium

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