RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G507630
Reference: TK1151 Chr: Chr02 Coordinates: 130254880-130257334 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1709 bp · TkA02G507630|TK1151|cDNA

AAACGGGATAATATCCCTTTCTCACATAAAAAAAAAAAAACATAAGAGCAAAGTGGAAAAGAGACGCAATGGCTAAAAATAAGAGGATCCAACAGAAAACGAGAAGTGGTGACTGGAAACTGTCCAAGCTAACGGAGTAGCAATGGCTGCCTACTCACTTCTTTCCACATGCGCCTTTTCTTCTCATCCTTTCCATAACTCCACCAAACCTTCCCTTTCTAGAACCCTCTCTCTTCGCACACCCAATAGCTATAGGCATA...

CDS

Download CDS FASTA

1305 bp · TkA02G507630|TK1151|CDS

ATGGCTGCCTACTCACTTCTTTCCACATGCGCCTTTTCTTCTCATCCTTTCCATAACTCCACCAAACCTTCCCTTTCTAGAACCCTCTCTCTTCGCACACCCAATAGCTATAGGCATACCCCGGGCCAATTCATCGTCGCTTCTTCTCTTCTCGAACCTTCTCGCCCCACCTACTCTCCGACGCCGGAACCTACCCACAGATCCACCTTGACCAAATTGCTGAACTCGTGCTTCGTTATTTGCACTTCCGTAGCTCTTTC...

Protein

Download Protein FASTA

434 aa · TkA02G507630|TK1151|PROTEIN

MAAYSLLSTCAFSSHPFHNSTKPSLSRTLSLRTPNSYRHTPGQFIVASSLLEPSRPTYSPTPEPTHRSTLTKLLNSCFVICTSVALSVSVFVTDVDSAAAFSVATPRKLQTDELATVRLFQENTPSVVYITNLASRQDAFTLDVLEVPQGSGSGFVWDKKGHVVTNYHVIRGASDLRVTLADQTTYDAKVVGFDQDKDVAVLSIDAPQDKLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATGR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G507630
TK1151 IDTkA02G507630
OH-1004 IDLXL04_006278
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)46.200
Protein coverage (%)TK1151 71.889 / OH-1004 65.859
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G507630
LocationChr02:130254880-130257334 (+)
DescriptionSimilar to DEGP8: Protease Do-like 8, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g27925 Serine protease that is required at high temperature.
High light stimulates Deg1-dependent cleavage of the minor LHCII antenna proteins CP26 and CP29 and the PsbS protein in Arabidopsis thaliana.2012 · DOI: 10.1007/s00425-011-1505-x
Identification and characterization of DegP, a serine protease associated with the luminal side of the thylakoid membrane.1998 · DOI: 10.1074/jbc.273.12.7094
At5g39830 Probable serine protease. No verified direct reference in this release
At4g18370 Probable serine protease. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_006278 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006508 proteolysis Biological Process
GO:0010206 photosystem II repair Biological Process
GO:0030163 protein catabolic process Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009534 chloroplast thylakoid Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
GO:0009536 plastid Cellular Component
GO:0009543 chloroplast thylakoid lumen Cellular Component
GO:0009579 thylakoid Cellular Component
KEGG gene cross-reference
ath:AT3G27925
ath:AT4G18370
ath:AT5G39830
bme:BMEI1330
bmel:DK63_73
bms:BR0611
bsi:BS1330_I0607
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.984
Rank 1 · TkA02G507630 · TK1151
Mitochondrion0.026
Rank 2 · TkA02G507630 · TK1151
Cytoplasm0.015
Rank 3 · TkA02G507630 · TK1151
Peroxisome0.011
Rank 4 · TkA02G507630 · TK1151
Nucleus0.010
Rank 5 · TkA02G507630 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05578Peptidase_S31140-185 aa
PF05579Peptidase_S32141-185 aa
PF02907Peptidase_S29149-165 aa
PF10459Peptidase_S46150-171 aa
PF13365Trypsin_2152-291 aa
PF00089Trypsin153-313 aa
PF17820PDZ_6220-233 aa
PF10459Peptidase_S46270-292 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G507630PF05578Peptidase_S311401850.08613.0
TkA02G507630PF05579Peptidase_S321411850.001118.9
TkA02G507630PF02907Peptidase_S291491650.01615.7
TkA02G507630PF10459Peptidase_S461501710.2210.8
TkA02G507630PF13365Trypsin_21522911.4e-36127.2
TkA02G507630PF00089Trypsin1533131e-1868.7
TkA02G507630PF17820PDZ_62202330.000819.8
TkA02G507630PF10459Peptidase_S462702920.2210.8
TkA02G507630PF02907Peptidase_S292713140.01615.7
TkA02G507630PF05579Peptidase_S322732940.001118.9
TkA02G507630PF13180PDZ_23304252.5e-1144.4
TkA02G507630PF17820PDZ_63573660.000819.8
TkA02G507630PF17820PDZ_63774160.000819.8
TkA02G507630PF00595PDZ3774140.2812.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O22609Arabidopsis thalianasp|O22609|DEGP1_ARATH Protease Do-like 1, chloroplastic90.000%Swiss-ProtHigh
Q9LU10Arabidopsis thalianasp|Q9LU10|DEGP8_ARATH Protease Do-like 8, chloroplastic48.200%Swiss-ProtMedium
Q9SEL7Arabidopsis thalianasp|Q9SEL7|DEGP5_ARATH Protease Do-like 5, chloroplastic50.000%Swiss-ProtLow

JBrowse

View in Genome Browser