TkA02G507470 | RubberDandelionOmics

Gene overview

TkA02G507470

Reference: TK1151 Chr: Chr02 Coordinates: 130217190-130219731 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1386 bp · TkA02G507470|TK1151|cDNA

TTTTGACTTGTCTTGCGAAACAAACCTCGGACTCGGGGAAAGGCCATCAGCGGAGTGCGTTGTACGACAGGTATGGATCCTTCGTCGTCGGCGGCGACGGCGGCGGAGTGGAAGCCAACAACAAGCCAGGAAGATCAATGGGCACTTGAGCGTCATGTTTTTCATATCTACCAACTCTTCTGTAATATTCCACCCAAATCACAAGCAGTTATGTTAGAGCTTCAAAGGGAAAATCACATCGAGTACCTCATGAAAGGTCT...

CDS

Download CDS FASTA

1191 bp · TkA02G507470|TK1151|CDS

ATGGATCCTTCGTCGTCGGCGGCGACGGCGGCGGAGTGGAAGCCAACAACAAGCCAGGAAGATCAATGGGCACTTGAGCGTCATGTTTTTCATATCTACCAACTCTTCTGTAATATTCCACCCAAATCACAAGCAGTTATGTTAGAGCTTCAAAGGGAAAATCACATCGAGTACCTCATGAAAGGTCTTCGGCATCTCGGTCCTTCGTTTTCCGTCTTAGATGCCAATCGGCCATGGATTTGCTATTGGATCCTACATTC...

Protein

Download Protein FASTA

396 aa · TkA02G507470|TK1151|PROTEIN

MDPSSSAATAAEWKPTTSQEDQWALERHVFHIYQLFCNIPPKSQAVMLELQRENHIEYLMKGLRHLGPSFSVLDANRPWICYWILHSLAILGESVDEDLENNAIDFISRCQDQHGGYGGGPGQMPHLATTYAAVNSLITLGGHKSLSSINRSKIYSFLQRMKHTSGGFSMHDGGEVDVRACYTAISVASALSILDKELIQGVGDYISSCQTYEGGIGGEPGSEAHGGYTFCGLATMILINEVNRLDLASLTDWLVFRQGV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G507470`
TK1151 ID	TkA02G507470
OH-1004 ID	LXL04_017178
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	60.400
Protein coverage (%)	TK1151 70.202 / OH-1004 40.443 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G507470

Location Chr02:130217190-130219731 (+)

Description Similar to EBP2: Probable rRNA-processing protein EBP2 homolog

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g40280`	Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic- aliphatic-X (CaaX).	The CaaX specificities of Arabidopsis protein prenyltransferases explain era1 and ggb phenotypes.2010 · DOI: 10.1186/1471-2229-10-118 ASG2 is a farnesylated DWD protein that acts as ABA negative regulator in Arabidopsis.2016 · DOI: 10.1111/pce.12605

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017178 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006364 rRNA processing Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009620 response to fungus Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process

GO:0009934 regulation of meristem structural organization Biological Process

GO:0018342 protein prenylation Biological Process

GO:0018343 protein farnesylation Biological Process

GO:0042273 ribosomal large subunit biogenesis Biological Process

GO:0047484 regulation of response to osmotic stress Biological Process

GO:0160062 cutin-based cuticle development Biological Process

GO:1901000 regulation of response to salt stress Biological Process

KEGG gene cross-reference

ath:AT3G22660

ath:AT5G40280

spo:2542121

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.646

Rank 1 · TkA02G507470 · TK1151

Nucleus0.361

Rank 2 · TkA02G507470 · TK1151

Mitochondrion0.112

Rank 3 · TkA02G507470 · TK1151

Peroxisome0.096

Rank 4 · TkA02G507470 · TK1151

Endoplasmic reticulum0.051

Rank 5 · TkA02G507470 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00432Prenyltrans50-377 aa

PF13243SQHop_cyclase_C74-169 aa

PF13249SQHop_cyclase_N82-145 aa

PF13249SQHop_cyclase_N150-181 aa

PF13249SQHop_cyclase_N185-215 aa

PF13243SQHop_cyclase_C203-264 aa

PF13249SQHop_cyclase_N240-266 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G507470	`PF00432`	Prenyltrans	50	377	1.1e-110	370.5
TkA02G507470	`PF13243`	SQHop_cyclase_C	74	169	0.0031	17.3
TkA02G507470	`PF13249`	SQHop_cyclase_N	82	145	0.0021	18.0
TkA02G507470	`PF13249`	SQHop_cyclase_N	150	181	0.0021	18.0
TkA02G507470	`PF13249`	SQHop_cyclase_N	185	215	0.0021	18.0
TkA02G507470	`PF13243`	SQHop_cyclase_C	203	264	0.0031	17.3
TkA02G507470	`PF13249`	SQHop_cyclase_N	240	266	0.0021	18.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q38920`	Arabidopsis thaliana	sp\|Q38920\|FNTB_ARATH Protein farnesyltransferase subunit beta	59.300%	Swiss-Prot	High

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