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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G505080
Reference: TK1151 Chr: Chr02 Coordinates: 129577740-129578604 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

525 bp · TkA02G505080|TK1151|cDNA

ATGTCAAAATTGACAAGCTTTAACTTTGAAAATGAAAAATGGACTATTATTTTGGGACGGAGATATGGCCTACCACAAGCGGCAACCGATTATTTGAAGGAGGTCAAATACATCTTCCAAGATCAAAGAGAAAAATATGACATGTTTCTTGATGTGCTTAAAGATTTTAAAGCTCAAAGAATTGATACCACTACTGTCGTAGCAAGGGTGAAAGAATTATTCAAAGGTTGCGATAATTTAATTTGCGGATTCAACGCTTT...

CDS

Download CDS FASTA

525 bp · TkA02G505080|TK1151|CDS

ATGTCAAAATTGACAAGCTTTAACTTTGAAAATGAAAAATGGACTATTATTTTGGGACGGAGATATGGCCTACCACAAGCGGCAACCGATTATTTGAAGGAGGTCAAATACATCTTCCAAGATCAAAGAGAAAAATATGACATGTTTCTTGATGTGCTTAAAGATTTTAAAGCTCAAAGAATTGATACCACTACTGTCGTAGCAAGGGTGAAAGAATTATTCAAAGGTTGCGATAATTTAATTTGCGGATTCAACGCTTT...

Protein

Download Protein FASTA

174 aa · TkA02G505080|TK1151|PROTEIN

MSKLTSFNFENEKWTIILGRRYGLPQAATDYLKEVKYIFQDQREKYDMFLDVLKDFKAQRIDTTTVVARVKELFKGCDNLICGFNAFLPKGYEIIDIEGIQKFNEATRFVNKIKCDFKNDDHVYKSFMYILEMYRKEHKSLNEIYHEVASLFDDHRDLLDEFIGFLPQFKFDIS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G505080
TK1151 IDTkA02G505080
OH-1004 IDLXL04_006191
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)64.200
Protein coverage (%)TK1151 80.460 / OH-1004 11.500
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G505080
LocationChr02:129577740-129578604 (+)
DescriptionSimilar to SNL2: Paired amphipathic helix protein Sin3-like 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g01320 Acts as a transcriptional repressor.
PAH-domain-specific interactions of the Arabidopsis transcription coregulator SIN3-LIKE1 (SNL1) with telomere-binding protein 1 and ALWAYS EARLY2 Myb-DNA binding factors.2010 · DOI: 10.1016/j.jmb.2009.11.065
At5g15020 Acts as a transcriptional repressor. No verified direct reference in this release
At1g70060 Acts as a transcriptional repressor. No verified direct reference in this release
At1g59890 Acts as a transcriptional repressor. No verified direct reference in this release
At1g24190 Acts as a transcriptional repressor.
Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses.2005 · DOI: 10.1105/tpc.105.033043

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_006191 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0045892 negative regulation of DNA-templated transcription Biological Process
GO:0000118 histone deacetylase complex Cellular Component
GO:0000785 chromatin Cellular Component
GO:0005634 nucleus Cellular Component
GO:0070822 Sin3-type complex Cellular Component
GO:0003714 transcription corepressor activity Molecular Function
KEGG gene cross-reference
ath:AT1G70060
ath:AT3G01320
ath:AT5G15020
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.647
Rank 1 · TkA02G505080 · TK1151
Nucleus0.416
Rank 2 · TkA02G505080 · TK1151
Cell membrane0.079
Rank 3 · TkA02G505080 · TK1151
Endoplasmic reticulum0.051
Rank 4 · TkA02G505080 · TK1151
Lysosome / Vacuole0.038
Rank 5 · TkA02G505080 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23116HHD_RTEL125-89 aa
PF29367IOC2_M29-61 aa
PF23202PAH_ZNF59830-79 aa
PF02671PAH33-42 aa
PF15704Mt_ATP_synt33-62 aa
PF12583TPPII_C41-62 aa
PF02671PAH44-88 aa
PF20292MC749-81 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G505080PF23116HHD_RTEL125896e-1040.5
TkA02G505080PF29367IOC2_M29610.1712.3
TkA02G505080PF23202PAH_ZNF59830792.8e-1041.0
TkA02G505080PF02671PAH33422.3e-31107.9
TkA02G505080PF15704Mt_ATP_synt33620.01915.6
TkA02G505080PF12583TPPII_C41620.2512.7
TkA02G505080PF02671PAH44882.3e-31107.9
TkA02G505080PF20292MC749810.01416.2
TkA02G505080PF15704Mt_ATP_synt981360.01915.6
TkA02G505080PF29367IOC2_M1031430.1712.3
TkA02G505080PF23116HHD_RTEL11041686e-1040.5
TkA02G505080PF23202PAH_ZNF5981071672.8e-1041.0
TkA02G505080PF12583TPPII_C1141260.2512.7
TkA02G505080PF02671PAH1221662.3e-31107.9
TkA02G505080PF20292MC71241590.01416.2
TkA02G505080PF12583TPPII_C1361560.2512.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SRH9Arabidopsis thalianasp|Q9SRH9|SNL1_ARATH Paired amphipathic helix protein Sin3-like 162.600%Swiss-ProtHigh
Q9LFQ3Arabidopsis thalianasp|Q9LFQ3|SNL2_ARATH Paired amphipathic helix protein Sin3-like 261.600%Swiss-ProtHigh
O04539Arabidopsis thalianasp|O04539|SNL4_ARATH Paired amphipathic helix protein Sin3-like 462.400%Swiss-ProtHigh
Q9XIE1Arabidopsis thalianasp|Q9XIE1|SNL5_ARATH Paired amphipathic helix protein Sin3-like 557.500%Swiss-ProtHigh
O48686Arabidopsis thalianasp|O48686|SNL3_ARATH Paired amphipathic helix protein Sin3-like 358.100%Swiss-ProtHigh

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