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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G504780
Reference: TK1151 Chr: Chr02 Coordinates: 129474484-129480463 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4227 bp · TkA02G504780|TK1151|cDNA

CTTATCATACAACCGTTCACATGCTACCCTTATTTCCCGTTTCCTTATGTATATATTTTGTCACAAAAATAGATACACCGAGTCTCTCCTACCCACCTTAAACACCGATTTGTTCTCTGCCCCTGTTTCTCTCACTCCCGACACCCTCAGAATTCCCCTGTCAACATGAGTAAACAGACAAACAAGAAAGTCAGCAATGGATCTATCCGATCGATTTTCATGCATGCCGACGGTGCCGACATGTTTCTGATGACCCTTGG...

CDS

Download CDS FASTA

2538 bp · TkA02G504780|TK1151|CDS

ATGAGTAAACAGACAAACAAGAAAGTCAGCAATGGATCTATCCGATCGATTTTCATGCATGCCGACGGTGCCGACATGTTTCTGATGACCCTTGGGTTTCTCGGTGCCGTCGGCGACGGAATTTCCATGCCGACGATGTTACTCATCACCAGTAAAATCATGAACAATATTGGAGATTCTTCCTCTTTATCTATCGCAGCCTTCACTGACAAAATTAACCAGAATTCAGTGAACCTTTGTTACATGGCTATTGGGATTTG...

Protein

Download Protein FASTA

845 aa · TkA02G504780|TK1151|PROTEIN

MSKQTNKKVSNGSIRSIFMHADGADMFLMTLGFLGAVGDGISMPTMLLITSKIMNNIGDSSSLSIAAFTDKINQNSVNLCYMAIGIWVSCFLEGYCWARTAERQASRLRSAYLKAVLRQEVAYFDLNVTSTAEIITSVSSDSLVIQEVISEKVPVFVMNVSIFGGAYIVAFVLLWRLAIVGLPFIIILVIPGLIYGRVLMSLSRKIREEYNKAGTVAEQAISSVRTVYSFVGENKTITEYSAALQGTVKLGLKQGLAKGI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G504780
TK1151 IDTkA02G504780
OH-1004 IDLXL04_013326
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)81.600
Protein coverage (%)TK1151 99.172 / OH-1004 34.891
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G504780
LocationChr02:129474484-129480463 (+)
DescriptionSimilar to ABCB15: ABC transporter B family member 15
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g28345 ABC transporter B family member 15. No verified direct reference in this release
At3g28380 ABC transporter B family member 17. No verified direct reference in this release
At3g28390 ABC transporter B family member 18. No verified direct reference in this release
At3g28415 ABC transporter B family member 22. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0190300 Putative multidrug resistance protein. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_013326 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0055085 transmembrane transport Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0016020 membrane Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0016887 ATP hydrolysis activity Molecular Function
GO:0042626 ATPase-coupled transmembrane transporter activity Molecular Function
GO:0140359 ABC-type transporter activity Molecular Function
KEGG gene cross-reference
ath:AT3G28345
ath:AT3G28390
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.401
Rank 1 · TkA02G504780 · TK1151
Lysosome / Vacuole0.307
Rank 2 · TkA02G504780 · TK1151
Endoplasmic reticulum0.143
Rank 3 · TkA02G504780 · TK1151
Cytoplasm0.119
Rank 4 · TkA02G504780 · TK1151
Golgi apparatus0.076
Rank 5 · TkA02G504780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00664ABC_membrane30-298 aa
PF22039HUTI_composite_bact290-299 aa
PF00005ABC_tran373-521 aa
PF05783DLIC378-409 aa
PF09818ABC_ATPase379-404 aa
PF13555AAA_29380-401 aa
PF03193RsgA_GTPase381-404 aa
PF05673DUF815382-443 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G504780PF00664ABC_membrane302982.5e-77261.0
TkA02G504780PF22039HUTI_composite_bact2902990.3911.1
TkA02G504780PF00005ABC_tran3735212.1e-33116.6
TkA02G504780PF05783DLIC3784090.06912.7
TkA02G504780PF09818ABC_ATPase3794040.001618.2
TkA02G504780PF13555AAA_293804010.004517.4
TkA02G504780PF03193RsgA_GTPase3814040.08913.3
TkA02G504780PF05673DUF8153824430.1511.9
TkA02G504780PF02463SMC_N3834001.3e-0628.7
TkA02G504780PF13191AAA_163835360.02715.7
TkA02G504780PF13604AAA_303845370.00318.0
TkA02G504780PF06414Zeta_toxin3844160.08812.9
TkA02G504780PF13401AAA_223855340.002818.7
TkA02G504780PF13521AAA_283854070.1113.5
TkA02G504780PF13304AAA_213864050.04214.5
TkA02G504780PF02463SMC_N4465641.3e-0628.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LHD1Arabidopsis thalianasp|Q9LHD1|AB15B_ARATH ABC transporter B family member 1571.300%Swiss-ProtHigh
Q9LSJ6Arabidopsis thalianasp|Q9LSJ6|AB17B_ARATH ABC transporter B family member 1765.400%Swiss-ProtHigh
Q9LSJ5Arabidopsis thalianasp|Q9LSJ5|AB18B_ARATH ABC transporter B family member 1864.400%Swiss-ProtHigh
Q9LSJ2Arabidopsis thalianasp|Q9LSJ2|AB22B_ARATH ABC transporter B family member 2263.400%Swiss-ProtHigh
Q6YUU5Oryza sativa subsp. japonicasp|Q6YUU5|MDR_ORYSJ Putative multidrug resistance protein69.000%Swiss-ProtHigh

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