Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1498 bp · TkA02G501850|TK1151|cDNA
GCAAAAGATCTGACGATTCTCAGAAAACCATCCATAAAACCCTAATCGAGTGCCATATCATTAGTTTTCATATTTCTTTAATCCCCCTAAAACCAAAAGCAGAAAGATATCCATGCGTCTTTCCTAAGCAGAATCTTCATCTCTCTGCTCCTTTTTCATCCATTTTATTGTTATCATTTGCGTCTCTAGGGTTCACAATTCCACTCAAAGATCCACAGAGACGCAGAAACAGACATGACGGAACACAACACTGCTGCCGT...
1011 bp · TkA02G501850|TK1151|CDS
ATGACGGAACACAACACTGCTGCCGTTACTGATTTGCCGATGAAAAAGCCCAGAGAAGGAGAAGAGAACGGAGCTTCCGCCACCGCCATCAATGGCGGCGGAACTGGAAGCATATCGTCTGTCATTCCTGGTTGGTTCTCAGAGATTAGTCCGATGTGGCCCGGAGAAGCACACTCTTTGAAGATTGAAAAGATACTGTTTCAGGGCAAGTCTGATTACCAGGATGTTATGGTTTTTCAGTCTGCAACATATGGAAAGGT...
Protein
Download Protein FASTA336 aa · TkA02G501850|TK1151|PROTEIN
MTEHNTAAVTDLPMKKPREGEENGASATAINGGGTGSISSVIPGWFSEISPMWPGEAHSLKIEKILFQGKSDYQDVMVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSVEHIDICEIDKMVVDVSKEYFPDVAVGYEDPRVTLHVGDGVAFLKAAQEGSYDAVIVDSSDPIGPAQELFEKPFFETVARALRPGGVVCTQAESIWLHMHIIEDIVSNCRQIFKGSVNY...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA02G501850 |
|---|---|
| TK1151 ID | TkA02G501850 |
| OH-1004 ID | LXL04_011565 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA02G501850 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:128610107-128613325 (-) | |||||||||
| Description | Similar to SPDSYN1: Spermidine synthase 1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0008295 spermidine biosynthetic process Biological Process GO:0005634 nucleus Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009507 chloroplast Cellular Component GO:0004766 spermidine synthase activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G23820 ath:AT1G70310 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF17284Spermine_synt_N44-98 aaPF01564Spermine_synth82-93 aaPF01564Spermine_synth101-289 aaPF05175MTS114-255 aaPF13489Methyltransf_23114-155 aaPF13649Methyltransf_25122-227 aaPF08242Methyltransf_12123-228 aaPF08241Methyltransf_11124-230 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA02G501850 | PF17284 | Spermine_synt_N | 44 | 98 | 1.2e-24 | 86.7 |
| TkA02G501850 | PF01564 | Spermine_synth | 82 | 93 | 8.1e-81 | 270.7 |
| TkA02G501850 | PF01564 | Spermine_synth | 101 | 289 | 8.1e-81 | 270.7 |
| TkA02G501850 | PF05175 | MTS | 114 | 255 | 0.00066 | 20.0 |
| TkA02G501850 | PF13489 | Methyltransf_23 | 114 | 155 | 0.18 | 12.2 |
| TkA02G501850 | PF13649 | Methyltransf_25 | 122 | 227 | 0.00013 | 23.3 |
| TkA02G501850 | PF08242 | Methyltransf_12 | 123 | 228 | 0.018 | 16.4 |
| TkA02G501850 | PF08241 | Methyltransf_11 | 124 | 230 | 0.024 | 16.0 |
| TkA02G501850 | PF13578 | Methyltransf_24 | 164 | 229 | 0.023 | 16.3 |
| TkA02G501850 | PF05430 | Methyltransf_30 | 166 | 233 | 0.0037 | 17.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.