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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G498160
Reference: TK1151 Chr: Chr02 Coordinates: 127622524-127624763 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2059 bp · TkA02G498160|TK1151|cDNA

TGGCGCCGAAGAACTTCATATATAGAGAAAGTTTAGCGTCCAGACAGGTTTAAAAGTTAAAACACTGCTCCACTCGCAATTTACGAAACCCTTCTTTGCTTGAGACATTCTAAATTGTGAGTTTTCTGTATCATATGAACATCTATCGGTACTTATTTTCTGTTTATTTTATTGGTTCGCTTCTCAACCTTTGTGAATAATAAAAGAAAGCTGATAAGCTTGGTCGTTTTGTGTGATTTATGGCTGCATCTTTGCCGACT...

CDS

Download CDS FASTA

1629 bp · TkA02G498160|TK1151|CDS

ATGGCTGCATCTTTGCCGACTTCGATTGTATTTGATATAACGGCTCTTGGTTTGTCCGAATACTATCATAATCGCTTACGTACTGCAAGAATTTCTGAAATATTTAGTTCAGACATTACATCAAACAGTTGGAGGGCGAAACGGAAAGCAGTGTCTTCCTGCGCCAATTCTAGAATTACTAGACTCGACAACCATGTACCCAAGGTCTCAATTTCATACGGGCCCGTTCTTGACGAGCATCCTACTTGGGACGATGATGG...

Protein

Download Protein FASTA

542 aa · TkA02G498160|TK1151|PROTEIN

MAASLPTSIVFDITALGLSEYYHNRLRTARISEIFSSDITSNSWRAKRKAVSSCANSRITRLDNHVPKVSISYGPVLDEHPTWDDDGEVDNASIPSFVPENRLQFLEERDEKNLSWRLLKLSRADKVRSALELYASMDFMGLRPEPHAFNALLSCLLRKDELDDALQVFESMKSSGRTSGHSYNLILQGVAKARGFKPAFQMFQQLIEDEHHPIKSDQVLFNMMLTLSRDEKDWLKSEWIWRKMKENNCIGNTTTYRLLV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G498160
TK1151 IDTkA02G498160
OH-1004 IDLXL04_013405
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G498160
LocationChr02:127622524-127624763 (-)
DescriptionSimilar to EMB2076: Pentatricopeptide repeat-containing protein At3g29290
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g29290 Pentatricopeptide repeat-containing protein At3g29290. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_013405 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G62930
ath:AT1G63130
ath:AT3G29290
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.755
Rank 1 · TkA02G498160 · TK1151
Mitochondrion0.145
Rank 2 · TkA02G498160 · TK1151
Nucleus0.065
Rank 3 · TkA02G498160 · TK1151
Cytoplasm0.022
Rank 4 · TkA02G498160 · TK1151
Cell membrane0.011
Rank 5 · TkA02G498160 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17177PPR_long107-207 aa
PF13041PPR_2121-144 aa
PF01535PPR121-141 aa
PF29070MSC6_N121-197 aa
PF12854PPR_1123-137 aa
PF23276TPR_24123-205 aa
PF02284COX5A127-192 aa
PF13762MNE1128-169 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G498160PF17177PPR_long1072073.7e-1659.9
TkA02G498160PF13041PPR_21211443.6e-54181.4
TkA02G498160PF01535PPR1211415.8e-43142.9
TkA02G498160PF29070MSC6_N1211975.3e-1452.8
TkA02G498160PF12854PPR_11231371.9e-29101.8
TkA02G498160PF23276TPR_241232052.2e-1867.2
TkA02G498160PF02284COX5A1271920.0002122.0
TkA02G498160PF13762MNE11281690.003518.0
TkA02G498160PF20308TPR-S1301750.004818.2
TkA02G498160PF08579RPM21331640.1713.0
TkA02G498160PF13812PPR_31361872.5e-2382.6
TkA02G498160PF12854PPR_11401731.9e-29101.8
TkA02G498160PF12921ATP131421722.2e-0731.4
TkA02G498160PF14559TPR_191461730.0006120.8
TkA02G498160PF13041PPR_21471923.6e-54181.4
TkA02G498160PF01535PPR1481765.8e-43142.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q84J46Arabidopsis thalianasp|Q84J46|PP262_ARATH Pentatricopeptide repeat-containing protein At3g2929056.000%Swiss-ProtHigh

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