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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G495240
Reference: TK1151 Chr: Chr02 Coordinates: 126785237-126787015 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1779 bp · TkA02G495240|TK1151|cDNA

ATGGCTAATATAAGATATGCTACAAATGAAAAACATTTAGTGAAGACAATCTGCGCAGTTGTGCTAAAAGGCTGTTCTTGGGACTCTCTCTTGAAACCCCAAATTGGTTCAATTATTTCCTCAACCACCGTTAATAACATACTCCAGAATCTATCCCAAAACGCGTCTTCTTGTATTATCTCTTGGAACTTCTTCAAATGGATCGAACTACACCCTAACTACAAGCACTCGTTACAATCTTCCTGGACCATGATTCACAT...

CDS

Download CDS FASTA

1779 bp · TkA02G495240|TK1151|CDS

ATGGCTAATATAAGATATGCTACAAATGAAAAACATTTAGTGAAGACAATCTGCGCAGTTGTGCTAAAAGGCTGTTCTTGGGACTCTCTCTTGAAACCCCAAATTGGTTCAATTATTTCCTCAACCACCGTTAATAACATACTCCAGAATCTATCCCAAAACGCGTCTTCTTGTATTATCTCTTGGAACTTCTTCAAATGGATCGAACTACACCCTAACTACAAGCACTCGTTACAATCTTCCTGGACCATGATTCACAT...

Protein

Download Protein FASTA

592 aa · TkA02G495240|TK1151|PROTEIN

MANIRYATNEKHLVKTICAVVLKGCSWDSLLKPQIGSIISSTTVNNILQNLSQNASSCIISWNFFKWIELHPNYKHSLQSSWTMIHILTKQRHFKSAHQLLDKIALRDFLSSPTVLNALSTTYDDQDVNSHVLSWLVIFYSNSKMTQDAIQVFEHMRVHNLKPHLPACTVLLNSLVKEKLTDTVWKVYKKMVKNGIVPNLHIYNVLIHACCNSSDIQKAEELLTEMEFKSIFPDLFTYNTLISLYCKKGMHYEALCIQDR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G495240
TK1151 IDTkA02G495240
OH-1004 IDLXL04_013452
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)96.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G495240
LocationChr02:126785237-126787015 (+)
DescriptionSimilar to At5g38730: Pentatricopeptide repeat-containing protein At5g38730
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g38730 Pentatricopeptide repeat-containing protein At5g38730. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_013452 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G09680
ath:AT5G38730
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.811
Rank 1 · TkA02G495240 · TK1151
Plastid0.084
Rank 2 · TkA02G495240 · TK1151
Nucleus0.056
Rank 3 · TkA02G495240 · TK1151
Cytoplasm0.037
Rank 4 · TkA02G495240 · TK1151
Cell membrane0.011
Rank 5 · TkA02G495240 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23276TPR_2436-95 aa
PF13041PPR_283-103 aa
PF12854PPR_183-103 aa
PF01535PPR83-104 aa
PF24760TPR_IF140_C83-104 aa
PF14559TPR_1983-109 aa
PF25058ARM_TT2183-103 aa
PF25569TPR_ZFYVE2685-107 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G495240PF23276TPR_2436951.9e-29103.0
TkA02G495240PF13041PPR_2831031.5e-94310.7
TkA02G495240PF12854PPR_1831033e-81267.5
TkA02G495240PF01535PPR831044.4e-71231.0
TkA02G495240PF24760TPR_IF140_C831048.5e-0626.9
TkA02G495240PF14559TPR_19831090.003818.2
TkA02G495240PF25058ARM_TT21831030.0414.6
TkA02G495240PF25569TPR_ZFYVE26851070.00517.8
TkA02G495240PF19189Mtf21041700.001718.8
TkA02G495240PF29070MSC6_N1192246.4e-2485.5
TkA02G495240PF23276TPR_241282231.9e-29103.0
TkA02G495240PF25062ARM_TT21_N1291571.2e-0525.9
TkA02G495240PF14559TPR_191291550.003818.2
TkA02G495240PF24760TPR_IF140_C1301578.5e-0626.9
TkA02G495240PF10366Vps39_11321580.001619.4
TkA02G495240PF20431E_motif1391690.08613.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FKR3Arabidopsis thalianasp|Q9FKR3|PP404_ARATH Pentatricopeptide repeat-containing protein At5g3873049.700%Swiss-ProtLow

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