Gene Card
Gene overview
cDNA / CDS / Protein Sequences
4386 bp · TkA02G494860|TK1151|cDNA
CTCGACTTAGTTCCGGTTACCGGCATTTGTAAGAACAGTTCGCGGTTTTTTCAGTATAAATACACGTTAGTAGCTTCAACATGCTCATCGCAATTTTGCAGGAATAGCTTCTTAATTTCCAACGAGTTTCATCTGATTAATCTTCCAAATCTGTAGGGTTATAAACAGCCTCCGTCGTCGCCATCTTCCCTTTGATGGCTATGACCACAAATGGCTTCTCTTCCAAGTTGATTCCATATTTCCTCCGCTATCTCACCTCA...
1767 bp · TkA02G494860|TK1151|CDS
ATGCTACGGGCTGGGCCATACATATGTGCAGAATGGGATTTTGGCGGTTTCCCTGCTTGGTTACTTACTAAAGAACCATCGATTAGACTTAGATCATCAGACCCAGTGTACCTCACTTTGGTTGATAAATGGTGGGAGACACTACTTCCAAAAATTGCCCTTCTTCTTTACCACAAAGGAGGCCCCATAGTTATGCTTCAGATTGAGAATGAATTTGGTTCATATGGAGTTGACAAAGACTATCTGCACCATCTGGTCAA...
Protein
Download Protein FASTA588 aa · TkA02G494860|TK1151|PROTEIN
MLRAGPYICAEWDFGGFPAWLLTKEPSIRLRSSDPVYLTLVDKWWETLLPKIALLLYHKGGPIVMLQIENEFGSYGVDKDYLHHLVNLARSHLGDDLIFCFFLKDGKVYRTLSLIIPIFCVDNFTRVGLHIGERIWLKLMFFSTASALEIILSRNGSAVLYMAHGGTNFGFYNGVNAQESESNYLADLTSYDYDAPISESGYVDGAKFKALRSVIAMYSAASLSPVPKNNEKTGYGGIKLEKTSSLFDILDSNLLTKAIE...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA02G494860 |
|---|---|
| TK1151 ID | TkA02G494860 |
| OH-1004 ID | LXL04_013849 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 85.100 |
| Protein coverage (%) | TK1151 50.340 / OH-1004 64.721Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA02G494860 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:126701353-126710016 (-) | ||||||||||||
| Description | Similar to BGAL17: Beta-galactosidase 17 | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
| ||||||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0009555 pollen development Biological Process GO:0009567 double fertilization forming a zygote and endosperm Biological Process GO:0019388 galactose catabolic process Biological Process GO:0005773 vacuole Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009507 chloroplast Cellular Component GO:0016020 membrane Cellular Component GO:0048046 apoplast Cellular Component GO:0004565 beta-galactosidase activity Molecular Function GO:0005388 P-type calcium transporter activity Molecular Function GO:0005516 calmodulin binding Molecular Function GO:0005524 ATP binding Molecular Function | ||||||||||||
| KEGG gene cross-reference | ath:AT1G72990 ath:AT3G21180 dosa:Os05g0539400 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01301Glyco_hydro_351-98 aaPF01301Glyco_hydro_35144-217 aaPF13966zf-RVT422-486 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA02G494860 | PF01301 | Glyco_hydro_35 | 1 | 98 | 1.8e-54 | 186.2 |
| TkA02G494860 | PF01301 | Glyco_hydro_35 | 144 | 217 | 1.8e-54 | 186.2 |
| TkA02G494860 | PF13966 | zf-RVT | 422 | 486 | 7.1e-15 | 56.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.