TkA02G489730 | RubberDandelionOmics

Gene overview

TkA02G489730

Reference: TK1151 Chr: Chr02 Coordinates: 125204855-125208230 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1174 bp · TkA02G489730|TK1151|cDNA

TCACAATTCGCATTTCAACATCAAATGTAGAGAGAAACTGCAAGACAAGAGGACGGTTGTTTTAGTGTTGCAAGTGGTTTTTGTTATTGGGTTTTGATTTTGAAAAGAGAGGTAATGTGGGATCTAAACGGGTCACCCGATCGGAGGAGGAGAGACGAAGAGGAAGCTGAGGGGTTTTCTTCGGTGCCGGTGGAAGGGGAGGAGGAATATAATAATCCGAAGGGTAAAAGGATTGGAGGATCCGTGTCCAATTCCAGCTC...

CDS

Download CDS FASTA

1551 bp · TkA02G489730|TK1151|CDS

ATGTGGGATCTAAACGGGTCACCCGATCGGAGGAGGAGAGACGAAGAGGAAGCTGAGGGGTTTTCTTCGGTGCCGGTGGAAGGGGAGGAGGAATATAATAATCCGAAGGGTAAAAGGATTGGAGGATCCGTGTCCAATTCCAGCTCATCGATCATAGTTATTGATCAGGACGACGGTTCTGACGGTGACGAGGATTCCGACGAGGGTGGCTTAAGGAAACTCACAACCACCGACGATAGCAGGTTGTTTGGGTTTTCAAT...

Protein

Download Protein FASTA

516 aa · TkA02G489730|TK1151|PROTEIN

MWDLNGSPDRRRRDEEEAEGFSSVPVEGEEEYNNPKGKRIGGSVSNSSSSIIVIDQDDGSDGDEDSDEGGLRKLTTTDDSRLFGFSMTDNLSWDYNPPVTHQFFPLEDSEVGSTTTFVGVGRETTSLPTTFPTSNWVGVKFSNQSTEPSSFGSGVAQGSNGFSGKAADVPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFIIQDYEDDLKQMSNLSKEE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G489730`
TK1151 ID	TkA02G489730
OH-1004 ID	LXL04_024350
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	65.600
Protein coverage (%)	TK1151 98.837 / OH-1004 97.172 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G489730

Location Chr02:125204855-125208230 (+)

Description Similar to AP2: Floral homeotic protein APETALA 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g36920`	Probable transcriptional activator that promotes early floral meristem identity.	No verified direct reference in this release
`At5g67180`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At5g60120`	Probably acts as a transcriptional activator.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: B8AVJ9`	Transcription factor.	No verified direct reference in this release
`Os04g0649100`	Transcription factor.	Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1.2012 · DOI: 10.1105/tpc.111.094383
`UniProt: B8AXC3`	Probable transcription factor (By similarity).	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024350 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009409 response to cold Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0009908 flower development Biological Process

GO:0009909 regulation of flower development Biological Process

GO:0010073 meristem maintenance Biological Process

GO:0010093 specification of floral organ identity Biological Process

GO:0030154 cell differentiation Biological Process

GO:0048316 seed development Biological Process

GO:0048460 flower formation Biological Process

GO:0048481 plant ovule development Biological Process

KEGG gene cross-reference

ath:AT4G36920

ath:AT5G67180

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.974

Rank 1 · TkA02G489730 · TK1151

Cytoplasm0.070

Rank 2 · TkA02G489730 · TK1151

Cell membrane0.024

Rank 3 · TkA02G489730 · TK1151

Endoplasmic reticulum0.017

Rank 4 · TkA02G489730 · TK1151

Plastid0.015

Rank 5 · TkA02G489730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00847AP2186-234 aa

PF00847AP2277-327 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G489730	`PF00847`	AP2	186	234	7.1e-21	75.0
TkA02G489730	`PF00847`	AP2	277	327	7.1e-21	75.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P47927`	Arabidopsis thaliana	sp\|P47927\|AP2_ARATH Floral homeotic protein APETALA 2	61.000%	Swiss-Prot	High
`Q9FH95`	Arabidopsis thaliana	sp\|Q9FH95\|TOE3_ARATH AP2-like ethylene-responsive transcription factor TOE3	64.000%	Swiss-Prot	Medium
`Q9LVG2`	Arabidopsis thaliana	sp\|Q9LVG2\|TOE2_ARATH AP2-like ethylene-responsive transcription factor TOE2	79.000%	Swiss-Prot	Low
`B8AVJ9`	Oryza sativa subsp. indica	sp\|B8AVJ9\|APL25_ORYSI APETALA2-like protein 5	81.000%	Swiss-Prot	Low
`A0A0N7KJT8`	Oryza sativa subsp. japonica	sp\|A0A0N7KJT8\|APL25_ORYSJ APETALA2-like protein 5	81.300%	Swiss-Prot	Low
`B8AXC3`	Oryza sativa subsp. indica	sp\|B8AXC3\|AP21_ORYSI APETALA2-like protein 1	90.000%	Swiss-Prot	Low

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