TkA02G486600 | RubberDandelionOmics

Gene overview

TkA02G486600

Reference: TK1151 Chr: Chr02 Coordinates: 124404069-124412297 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1388 bp · TkA02G486600|TK1151|cDNA

CATTTACTCTAGTCTCGGGGTGGCAACAGCCCATATTACAATATTGAGCTCAAGGAGTTGCATGTTGCTGGGAAACGATTGCCTTTGAATCCAAGTGTTTTTGATGGAAAACATGGGACAGTTCTTGACAGTGGGACCACATATGCTTATTTACCTGAAGCTGCTTATATTGCATTTAAGGAGGCTGTCATGGAAAATCTCCATAATGTGAAAAAGATCAGAGGCCCTGATCCAAGTTATAATGACGTTTGCTTTTCTGG...

CDS

Download CDS FASTA

1935 bp · TkA02G486600|TK1151|CDS

ATGGCGCGATCCACCTGTGCACTGTTCTCGTCTACCACCGCTACCGTGATCCTGTCGATTTTCAGGTTGTTTATGTGGCCTTCGTTGTTTGTTTCTGCGTTCCTCGATGATCCAAGCACTATTATTCTCCATCCTCCGCATGCTGGTAGCAATCGTCACACCATGTTTCTACCTCTTTCGTCACCTCCTAACTCCTCCCGGATCTCCTCCTTCTGCGGCGGAGGGAAATCACGGCGTCACCTCCAGAAATCCGATACGCC...

Protein

Download Protein FASTA

644 aa · TkA02G486600|TK1151|PROTEIN

MARSTCALFSSTTATVILSIFRLFMWPSLFVSAFLDDPSTIILHPPHAGSNRHTMFLPLSSPPNSSRISSFCGGGKSRRHLQKSDTPRPNARMALHDDLLLNGYYTTRIWIGSPPQKFALIVDTGSTVTYVPCSTCVQCGKHQDPKFDPDSSSTYKPLKCNMDCTCDHEKKQCVYERQYAEMSSSSGVLGEDIISFGNQSKLSPQRAVFGCENVETGDLYSQHADGIMGLGRGDLSLIDQLVDRGVISDSFSLCYGGMDI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G486600`
TK1151 ID	TkA02G486600
OH-1004 ID	LXL04_013590
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G486600

Location Chr02:124404069-124412297 (-)

Description Similar to At1g65240: Aspartic proteinase-like protein 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g36260`	Displays aspartic proteolytic activity.	No verified direct reference in this release
`At1g09750`	Aspartyl protease AED3.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2ZC67`	Possesses protease activity in vitro.	No verified direct reference in this release
`Os04g0448500`	Anther-specific aspartic protease involved in tapetal programmed cell death (PCD).	EAT1 promotes tapetal cell death by regulating aspartic proteases during male reproductive development in rice.2013 · DOI: 10.1038/ncomms2396

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013590 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0009555 pollen development Biological Process

GO:0009846 pollen germination Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0030163 protein catabolic process Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT1G49050

ath:AT1G65240

ath:AT5G36260

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.567

Rank 1 · TkA02G486600 · TK1151

Lysosome / Vacuole0.118

Rank 2 · TkA02G486600 · TK1151

Cytoplasm0.109

Rank 3 · TkA02G486600 · TK1151

Extracellular0.102

Rank 4 · TkA02G486600 · TK1151

Endoplasmic reticulum0.092

Rank 5 · TkA02G486600 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14543TAXi_N105-269 aa

PF00026Asp105-442 aa

PF14541TAXi_C289-442 aa

PF23180ALE2_N479-577 aa

PF03982DAGAT571-634 aa

PF09976TPR_21588-622 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G486600	`PF14543`	TAXi_N	105	269	3e-37	129.2
TkA02G486600	`PF00026`	Asp	105	442	3e-35	122.9
TkA02G486600	`PF14541`	TAXi_C	289	442	1.4e-28	100.4
TkA02G486600	`PF23180`	ALE2_N	479	577	0.0095	16.7
TkA02G486600	`PF03982`	DAGAT	571	634	0.27	10.8
TkA02G486600	`PF09976`	TPR_21	588	622	0.32	11.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q4V3D2`	Arabidopsis thaliana	sp\|Q4V3D2\|ASP36_ARATH Aspartic proteinase 36	33.900%	Swiss-Prot	Medium
`O04496`	Arabidopsis thaliana	sp\|O04496\|AED3_ARATH Aspartyl protease AED3	25.600%	Swiss-Prot	Low
`A2ZC67`	Oryza sativa subsp. indica	sp\|A2ZC67\|ASP1_ORYSI Aspartic proteinase Asp1	26.900%	Swiss-Prot	Low
`Q7XV21`	Oryza sativa subsp. japonica	sp\|Q7XV21\|AP37_ORYSJ Aspartyl protease 37	25.500%	Swiss-Prot	Low

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