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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G479760
Reference: TK1151 Chr: Chr02 Coordinates: 122400142-122402452 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1740 bp · TkA02G479760|TK1151|cDNA

GTTTTGCAGAAATTTATAATAAAAATACTACTGTTCAATGTTCCTATATAATTATCTTAGGAGGGCAGAAATGGAAACATGAGGCAACGTTGGGTTTTAAAGAGGTTTAAGGAACTTTCAGTTATCCAGATATTTTTCGCACTGGGTCACTAGCTAGATCTCTTGTTGAAGAACATGAGCAACTTAATCGGATTCAAGCCTCCGACCTCCACCCTCGCCGCCACTGCTGCGGCCTCAAAGCCCTCTCTCTTCAACCTTTC...

CDS

Download CDS FASTA

1293 bp · TkA02G479760|TK1151|CDS

ATGAGCAACTTAATCGGATTCAAGCCTCCGACCTCCACCCTCGCCGCCACTGCTGCGGCCTCAAAGCCCTCTCTCTTCAACCTTTCGTTCAATAGCGAATTTCTCGTAACTACCCCTAAAGCCTCCTCACTTGTATTCTTATCCTTCAAATCCCATAAGCCCCCAACCGCCAAATTCAACAAATTCCAGACTTCAAAGACTTCATGTAGCAATTCGGGTACAGCACAACTTGAGGAGGGCCAAGAAGCTGAAATCGCTGA...

Protein

Download Protein FASTA

430 aa · TkA02G479760|TK1151|PROTEIN

MSNLIGFKPPTSTLAATAAASKPSLFNLSFNSEFLVTTPKASSLVFLSFKSHKPPTAKFNKFQTSKTSCSNSGTAQLEEGQEAEIAEGYTMTKFCDKIIDLFLNEKPKPKDWMSYLIFREDWNKYRDYFYNRCKSRADTENDFTLKQSFVTLATEVKKLDDEMERHSELLKQIEDSPMDINAIVTKRRKDFTGEFFRYLTVVQETRDSIEDRDATARLGARCLSAVSAYDNTLETMESLDDAQAKFDDILDSPSIEAACA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G479760
TK1151 IDTkA02G479760
OH-1004 IDLXL04_013668
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G479760
LocationChr02:122400142-122402452 (+)
DescriptionSimilar to At4g37920: Uncharacterized protein At4g37920
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g37920 Uncharacterized protein At4g37920. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_013668 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009658 chloroplast organization Biological Process
GO:0032544 plastid translation Biological Process
GO:0009507 chloroplast Cellular Component
GO:0009534 chloroplast thylakoid Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0009941 chloroplast envelope Cellular Component
KEGG gene cross-reference
ath:AT4G37920
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.948
Rank 1 · TkA02G479760 · TK1151
Mitochondrion0.049
Rank 2 · TkA02G479760 · TK1151
Nucleus0.035
Rank 3 · TkA02G479760 · TK1151
Cytoplasm0.019
Rank 4 · TkA02G479760 · TK1151
Cell membrane0.013
Rank 5 · TkA02G479760 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21938CAP_N43-62 aa
PF26740DUF824689-232 aa
PF30872At4g37920_M93-101 aa
PF30778SBP_bac_4HB136-181 aa
PF21938CAP_N138-205 aa
PF30778SBP_bac_4HB234-267 aa
PF30872At4g37920_M237-246 aa
PF30872At4g37920_M248-315 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G479760PF21938CAP_N43620.001919.0
TkA02G479760PF26740DUF8246892322.3e-61206.6
TkA02G479760PF30872At4g37920_M931012.3e-33114.7
TkA02G479760PF30778SBP_bac_4HB1361819.67.2
TkA02G479760PF21938CAP_N1382050.001919.0
TkA02G479760PF30778SBP_bac_4HB2342679.67.2
TkA02G479760PF30872At4g37920_M2372462.3e-33114.7
TkA02G479760PF30872At4g37920_M2483152.3e-33114.7
TkA02G479760PF26740DUF82462673072.3e-61206.6
TkA02G479760PF30778SBP_bac_4HB2873159.67.2
TkA02G479760PF30870At4g37920_C3184113.1e-41140.4
TkA02G479760PF30778SBP_bac_4HB3564189.67.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q84WN0Arabidopsis thalianasp|Q84WN0|Y4920_ARATH Uncharacterized protein At4g3792071.000%Swiss-ProtHigh

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