TkA02G468110 | RubberDandelionOmics

Gene overview

TkA02G468110

Reference: TK1151 Chr: Chr02 Coordinates: 119393222-119400482 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1949 bp · TkA02G468110|TK1151|cDNA

AAAGGAATAACACATTGCTTATGTGTCACCTTCTTAGAGCCTATGCCACATGTCAATTAATAGGAATAAATCTTTTTTTCTAAAAATATGAAGAAATTGACAACTGGATCGACGATGGTTGAATGCTTTAAACCCATAAGCGGCCGTTTTCCTCAGTCATTAATTTCGTTTTCATTTTGTAAACGGTTACGAACGACTTTTGTGGGTTGATTTATATCTCATTCGGCGATTTCCTTACATCACAGTCGAAGGGGATCGGC...

CDS

Download CDS FASTA

1020 bp · TkA02G468110|TK1151|CDS

ATGACGGGAGAAAAGCAAGATTGTAAGCTGATGTGCAGGAACCATGATGGTAACTGGTGTGGGATAAATACAGAATGGGGTTTGTTAATGGCAAGCATTTCAGACACCGGTGAAGAAACTCCATTACAGGTATGGTTGAATGGTGTTGCAACATTTATAGATATAGTTTCATTTATTGAGCTGTGTCAGAAGTTAGATTTGTTGGTCATGCTACGGGCTGGGCCATACATATGTGCAGAATGGGATTTTGGCGGTTTCCC...

Protein

Download Protein FASTA

339 aa · TkA02G468110|TK1151|PROTEIN

MTGEKQDCKLMCRNHDGNWCGINTEWGLLMASISDTGEETPLQVWLNGVATFIDIVSFIELCQKLDLLVMLRAGPYICAEWDFGGFPAWLLTKEPSIRLRSSDPVYLTLVDKWWGTLLPKIALLLYHKGGPIVMLQMAHGGTNFGFYNGVNAQESESNYLADLTSYDYDAPISESGYVDGAKFKALRSVIAMYSAASLSPVPKNNEKTGYGGIKLEKTSSLFDILDSNLLTKAIEYDNPISMEVAGQMFGFLLYTSEYTA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G468110`
TK1151 ID	TkA02G468110
OH-1004 ID	LXL04_013849
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	82.400
Protein coverage (%)	TK1151 74.631 / OH-1004 77.665 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G468110

Location Chr02:119393222-119400482 (-)

Description Similar to BGAL17: Beta-galactosidase 17

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g72990`	Beta-galactosidase 17.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0539400`	Beta-galactosidase 8.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013849 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009555 pollen development Biological Process

GO:0009567 double fertilization forming a zygote and endosperm Biological Process

GO:0019388 galactose catabolic process Biological Process

GO:0005773 vacuole Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004565 beta-galactosidase activity Molecular Function

GO:0005388 P-type calcium transporter activity Molecular Function

GO:0005516 calmodulin binding Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G72990

ath:AT3G21180

dosa:Os05g0539400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.629

Rank 1 · TkA02G468110 · TK1151

Cytoplasm0.127

Rank 2 · TkA02G468110 · TK1151

Endoplasmic reticulum0.108

Rank 3 · TkA02G468110 · TK1151

Lysosome / Vacuole0.083

Rank 4 · TkA02G468110 · TK1151

Nucleus0.049

Rank 5 · TkA02G468110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01301Glyco_hydro_3553-137 aa

PF01301Glyco_hydro_35136-192 aa

PF21317BetaGal_ABD_1239-282 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G468110	`PF01301`	Glyco_hydro_35	53	137	1.2e-46	160.5
TkA02G468110	`PF01301`	Glyco_hydro_35	136	192	1.2e-46	160.5
TkA02G468110	`PF21317`	BetaGal_ABD_1	239	282	0.00019	22.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q93Z24`	Arabidopsis thaliana	sp\|Q93Z24\|BGA17_ARATH Beta-galactosidase 17	38.800%	Swiss-Prot	Medium
`Q0DGD7`	Oryza sativa subsp. japonica	sp\|Q0DGD7\|BGAL8_ORYSJ Beta-galactosidase 8	39.900%	Swiss-Prot	Medium

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