TkA02G458820 | RubberDandelionOmics

Gene overview

TkA02G458820

Reference: TK1151 Chr: Chr02 Coordinates: 116883103-116890366 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1851 bp · TkA02G458820|TK1151|cDNA

CGTTGTTCGGTTTGGATATGGGTCGGATCCGGGTCGCAGTGAAGATGAGTCGCGTGTGGCACTGTAGAAACACGCCACGGGTTTTATTATATAGATAGATAATAATGTAGGTACGAGAATAATAACTCCTACCCGGATGCCAACATTCGTGCCGGTATTGTAATATGTGGTAATGCAACATCACCTCAACAATCAAACTTCTAGAAAATCAGTAGAAGGATTGATATCAGACCTTCGAACAACAGCACCAAGAACACCAA...

CDS

Download CDS FASTA

861 bp · TkA02G458820|TK1151|CDS

ATGGCCTCCACTAAAGGAAAAATACACTTCGATGATGAACTTAAAATCATAAGCAATGTTCATCACCGGCATCTTATTCGTCTTCTTGGATATTGTAGCAAAGGGCCTCTCTTATATCTTGTCCACGAGTTCATGGACAATGGTAGCCTTGATCAATTCCTTTATGGTGACAAATCAAGGAATCTAAGTTGGAAACAAAGGTTTGACATAATCTTTGGAACCGCAAGAGGTCTTGCATATCTTCATGAACAGTACCATGT...

Protein

Download Protein FASTA

286 aa · TkA02G458820|TK1151|PROTEIN

MASTKGKIHFDDELKIISNVHHRHLIRLLGYCSKGPLLYLVHEFMDNGSLDQFLYGDKSRNLSWKQRFDIIFGTARGLAYLHEQYHVTVIHRDIKTSNILLDDELQPKIADIGLIRLLPEDKTHISTKLAESLDNCYIAPEYAIHGHLSEKVDTYSFGIVVLEIISGKRCTDVIDEKSVHQNLLDHAWNLYENGTHVSLVDERLDASEYASEDASKIIEIALMCTQSQVSARPAMSEVVTLLSDKSVDEMPTVRSTYQED...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G458820`
TK1151 ID	TkA02G458820
OH-1004 ID	LXL04_013983
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 60.593 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G458820

Location Chr02:116883103-116890366 (+)

Description Similar to CRK3: Cysteine-rich receptor-like protein kinase 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g40380`	Cysteine-rich receptor-like protein kinase 42.	No verified direct reference in this release
`At1g53420`	Probable LRR receptor-like serine/threonine-protein kinase At1g53420.	No verified direct reference in this release
`At1g70530`	Cysteine-rich receptor-like protein kinase 3.	No verified direct reference in this release
`At4g11490`	Putative cysteine-rich receptor-like protein kinase 33.	No verified direct reference in this release
`At1g19090`	Cysteine-rich receptor-like protein kinase 1.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013983 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0010193 response to ozone Biological Process

GO:0045088 regulation of innate immune response Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0052542 defense response by callose deposition Biological Process

GO:0052545 callose localization Biological Process

GO:0072593 reactive oxygen species metabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G19090

ath:AT1G56130

ath:AT1G56140

ath:AT1G70520

ath:AT1G70530

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.532

Rank 1 · TkA02G458820 · TK1151

Cytoplasm0.363

Rank 2 · TkA02G458820 · TK1151

Nucleus0.207

Rank 3 · TkA02G458820 · TK1151

Endoplasmic reticulum0.052

Rank 4 · TkA02G458820 · TK1151

Golgi apparatus0.052

Rank 5 · TkA02G458820 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714PK_Tyr_Ser-Thr7-241 aa

PF00069Pkinase8-239 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G458820	`PF07714`	PK_Tyr_Ser-Thr	7	241	4.1e-39	135.1
TkA02G458820	`PF00069`	Pkinase	8	239	2.3e-34	119.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FNE1`	Arabidopsis thaliana	sp\|Q9FNE1\|CRK42_ARATH Cysteine-rich receptor-like protein kinase 42	46.100%	Swiss-Prot	Medium
`C0LGG7`	Arabidopsis thaliana	sp\|C0LGG7\|Y1534_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g53420	46.400%	Swiss-Prot	Medium
`Q9CAL2`	Arabidopsis thaliana	sp\|Q9CAL2\|CRK3_ARATH Cysteine-rich receptor-like protein kinase 3	44.100%	Swiss-Prot	Medium
`Q9LDN1`	Arabidopsis thaliana	sp\|Q9LDN1\|CRK33_ARATH Putative cysteine-rich receptor-like protein kinase 33	41.500%	Swiss-Prot	Medium
`Q9LMB9`	Arabidopsis thaliana	sp\|Q9LMB9\|CRK1_ARATH Cysteine-rich receptor-like protein kinase 1	46.400%	Swiss-Prot	Medium

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