TkA02G456550 | RubberDandelionOmics

Gene overview

TkA02G456550

Reference: TK1151 Chr: Chr02 Coordinates: 116243074-116245339 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1997 bp · TkA02G456550|TK1151|cDNA

CACCTTATAAAGTTAAAAACACACTACAAAAACCCCAAAACCTTCCTCGGAATATGTATCTTCTACCCTTAAAAATGTATCTTCTGCCCTTCACCTTCTGGCTACTTCCGGTCGCCATATCCACCGCAGCGCCACCGCTCCTGCCAGGATACTACGCCAAATCCTGCCCAAATGCAGAGATCATCGTCAGAGATGTTATGAAGAAGGCGATGATGAGAGAACCCAGAAGTGGAGCTTCTGTCATGCGACTTCAATTCCAT...

CDS

Download CDS FASTA

1038 bp · TkA02G456550|TK1151|CDS

ATGTATCTTCTACCCTTAAAAATGTATCTTCTGCCCTTCACCTTCTGGCTACTTCCGGTCGCCATATCCACCGCAGCGCCACCGCTCCTGCCAGGATACTACGCCAAATCCTGCCCAAATGCAGAGATCATCGTCAGAGATGTTATGAAGAAGGCGATGATGAGAGAACCCAGAAGTGGAGCTTCTGTCATGCGACTTCAATTCCATGATTGTTTCGTCAACGGATGTGACGGGTCGCTGTTGTTGGATGATACTCCGAC...

Protein

Download Protein FASTA

345 aa · TkA02G456550|TK1151|PROTEIN

MYLLPLKMYLLPFTFWLLPVAISTAAPPLLPGYYAKSCPNAEIIVRDVMKKAMMREPRSGASVMRLQFHDCFVNGCDGSLLLDDTPTMLGEKLSLSNIDSLRSYEVVDEVKEALESACPHIVSCADIIIMASRDAVALSGGPDWEVKLGRKDSLTASQKDSDDIMPSPRANASSLIDLFARFELSVKDLVALSGSHSIGNGRCFSIVFRLYNQSGTGRPDPAIEPAFRRKLDKLCPLGGDGNVTGDLDFTPHVFDNQYFK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G456550`
TK1151 ID	TkA02G456550
OH-1004 ID	LXL04_014101
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	83.400
Protein coverage (%)	TK1151 94.493 / OH-1004 66.260 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G456550

Location Chr02:116243074-116245339 (+)

Description Similar to PER17: Peroxidase 17

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g22420`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At2g18150`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At4g36430`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At5g19890`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014101 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0009809 lignin biosynthetic process Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0042744 hydrogen peroxide catabolic process Biological Process

GO:0051707 response to other organism Biological Process

GO:0080001 mucilage extrusion from seed coat Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005773 vacuole Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0004601 peroxidase activity Molecular Function

KEGG gene cross-reference

ath:AT2G18150

ath:AT2G22420

ath:AT4G36430

ath:AT5G19890

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.472

Rank 1 · TkA02G456550 · TK1151

Extracellular0.222

Rank 2 · TkA02G456550 · TK1151

Cytoplasm0.109

Rank 3 · TkA02G456550 · TK1151

Cell membrane0.095

Rank 4 · TkA02G456550 · TK1151

Endoplasmic reticulum0.092

Rank 5 · TkA02G456550 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00141peroxidase45-291 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G456550	`PF00141`	peroxidase	45	291	4.2e-77	259.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SJZ2`	Arabidopsis thaliana	sp\|Q9SJZ2\|PER17_ARATH Peroxidase 17	78.100%	Swiss-Prot	High
`Q9SI16`	Arabidopsis thaliana	sp\|Q9SI16\|PER15_ARATH Peroxidase 15	50.300%	Swiss-Prot	High
`O23237`	Arabidopsis thaliana	sp\|O23237\|PER49_ARATH Peroxidase 49	48.500%	Swiss-Prot	Medium
`Q39034`	Arabidopsis thaliana	sp\|Q39034\|PER59_ARATH Peroxidase 59	48.000%	Swiss-Prot	Medium

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