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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G452600
Reference: TK1151 Chr: Chr02 Coordinates: 115175680-115180065 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2167 bp · TkA02G452600|TK1151|cDNA

GTATTTTGTCCAACGGATAGACGGTATCTCTTGGGATGGTGCGTTATTTCCAACGCCGTGACAAACCCCCCACCACCAGCATCTCCTCAATTTCAGATTCTTTCTCTCTACTACTTACCCGATTTAAACCTTCAAACCCCACACAATTACTTGATTTTGCTCAATTCTCTATCTTTTTCGGATAGAGAATACAGAGGAGGGGTGATTTTGCGCATGTGAAGTTAGTTACATGGCTACCTCAACAACCTCCTCTACCTCGT...

CDS

Download CDS FASTA

1767 bp · TkA02G452600|TK1151|CDS

ATGGCTACCTCAACAACCTCCTCTACCTCGTCTCTATGTTTTCCGGCCACTTCTGCTGCCGGAACCCGTAGTTCTTTTCCCACTAATGATACATTTTTACGGTGTCGACGGACCCGTCAGTTGACCCGATTGAAGACTCACAAGTCTGTTGTTCGGTCGGATTTGGACAGAGATGTATCAGACATGAGAACTAATGCTCCAAAAGGATTATTTCCACCAGAACCTGAACATTATCGGGGCCCAAAATTGAAAGTGGCTAT...

Protein

Download Protein FASTA

588 aa · TkA02G452600|TK1151|PROTEIN

MATSTTSSTSSLCFPATSAAGTRSSFPTNDTFLRCRRTRQLTRLKTHKSVVRSDLDRDVSDMRTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRTFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLLVKDHTHTFVNRGGELGELDFRFPVGAPLHGINAFLTTNQLNTYDKSRNAVALALSPVVRALVDPDGAMTQIRNLDNISFSEWFMSKGGTRKSIQRMWDPV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G452600
TK1151 IDTkA02G452600
OH-1004 IDLXL04_014105
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G452600
LocationChr02:115175680-115180065 (-)
DescriptionSimilar to Zeta-carotene desaturase, chloroplastic/chromoplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g04870 Plays a crucial role in plant growth and development.
The Arabidopsis Spontaneous Cell Death1 gene, encoding a zeta-carotene desaturase essential for carotenoid biosynthesis, is involved in chloroplast development, photoprotection and retrograde signalling.2007 · DOI: 10.1038/cr.2007.37
An Uncharacterized Apocarotenoid-Derived Signal Generated in ζ-Carotene Desaturase Mutants Regulates Leaf Development and the Expression of Chloroplast and Nuclear Genes in Arabidopsis.2014 · DOI: 10.1105/tpc.114.123349

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014105 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0016117 carotenoid biosynthetic process Biological Process
GO:0016120 carotene biosynthetic process Biological Process
GO:0009507 chloroplast Cellular Component
GO:0009509 chromoplast Cellular Component
GO:0016719 9,9'-di-cis-zeta-carotene desaturase activity Molecular Function
KEGG gene cross-reference
ag:CAA61985
cann:107839468
sly:543629
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.982
Rank 1 · TkA02G452600 · TK1151
Mitochondrion0.026
Rank 2 · TkA02G452600 · TK1151
Cytoplasm0.013
Rank 3 · TkA02G452600 · TK1151
Cell membrane0.012
Rank 4 · TkA02G452600 · TK1151
Nucleus0.011
Rank 5 · TkA02G452600 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13738Pyr_redox_382-116 aa
PF01494FAD_binding_383-111 aa
PF01266DAO84-119 aa
PF07992Pyr_redox_284-119 aa
PF06100MCRA84-158 aa
PF03486HI0933_like84-121 aa
PF01262AlaDh_PNT_C84-115 aa
PF01134GIDA84-112 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G452600PF13738Pyr_redox_3821160.2311.4
TkA02G452600PF01494FAD_binding_3831110.003217.5
TkA02G452600PF01266DAO841198.3e-0729.6
TkA02G452600PF07992Pyr_redox_2841190.0004520.4
TkA02G452600PF06100MCRA841580.0008219.0
TkA02G452600PF03486HI0933_like841210.001319.0
TkA02G452600PF01262AlaDh_PNT_C841150.01415.6
TkA02G452600PF01134GIDA841120.07112.9
TkA02G452600PF027373HCDH_N841140.1612.6
TkA02G452600PF03807F420_oxidored841150.2912.5
TkA02G452600PF00070Pyr_redox841150.5111.6
TkA02G452600PF12831FAD_oxidored851230.00119.2
TkA02G452600PF00890FAD_binding_2851180.001618.5
TkA02G452600PF13454NAD_binding_9861200.1313.0
TkA02G452600PF13450NAD_binding_8871525.8e-1452.8
TkA02G452600PF01593Amino_oxidase925547.4e-72243.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q38893Arabidopsis thalianasp|Q38893|ZDS_ARATH Zeta-carotene desaturase, chloroplastic/chromoplastic81.300%Swiss-ProtHigh

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