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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G451960
Reference: TK1151 Chr: Chr02 Coordinates: 115016492-115023788 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1656 bp · TkA02G451960|TK1151|cDNA

GTTATCAAACGCGGATGCATCACTCACCAGCTGAGCTTGTTCGAACGTTATGGGATCACGATATACGCGTTGAACGACCAAGCTTCACCACTTTTCCCGCCGGTCCCGCTTTCATTCTAATCATTAAGCCGACACTGTCGCCTTGGCGAGCCACCGTCTTCCCCGAAGGCGAATACTTGTACGAGTTCAGATCTGTCCTCGCACGATGTCCATGTCGCATTCCCATGGTCAAGGTACGAGCGAAGGTGGCAATGTCGATT...

CDS

Download CDS FASTA

1083 bp · TkA02G451960|TK1151|CDS

ATGTCCATGTCGCATTCCCATGGTCAAGGTACGAGCGAAGGTGGCAATGTCGATTTCCTTAAGATGTGCGATGGCTTCTGCTACGGCTTATCTTCTCTTCAAGAGCTCGCCTGCCGTGGCGCATGGAGATCGGTTCTCGATAAAGTCACTCAAGCACGTTCCAAGTCTCTCCTCTCTAAACCTCACGAACATCTCGTTTACCTCACCTACAACGCCATAGCTCTCACCAAACTCCGCCGTTTCTCTGAAGCAGTCGCCGA...

Protein

Download Protein FASTA

360 aa · TkA02G451960|TK1151|PROTEIN

MSMSHSHGQGTSEGGNVDFLKMCDGFCYGLSSLQELACRGAWRSVLDKVTQARSKSLLSKPHEHLVYLTYNAIALTKLRRFSEAVAELDLVDKGLDIYRYETYPHHYPNRHGSMAPFVLRWLHAELPSRLGKRQETLDRFYLLLQFIREKLTKNLPNASRQVWSKRESLVINSIISHQLCHKEFGVCLDLMKDLIKRDSTPVARAILMAKLGYIQMQYGDLEGARGTFHVIEGIVNEGNGEIEMKNLVNRNRALTFMVEK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G451960
TK1151 IDTkA02G451960
OH-1004 IDLXL04_014116
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)99.700
Protein coverage (%)TK1151 80.556 / OH-1004 71.429
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G451960
LocationChr02:115016492-115023788 (+)
DescriptionSimilar to Trappc12: Trafficking protein particle complex subunit 12
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014116 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Biological Process
GO:0007030 Golgi organization Biological Process
GO:0048208 COPII vesicle coating Biological Process
GO:0051310 metaphase chromosome alignment Biological Process
GO:0090234 regulation of kinetochore assembly Biological Process
GO:0099022 vesicle tethering Biological Process
GO:1905342 positive regulation of protein localization to kinetochore Biological Process
GO:0000776 kinetochore Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005793 endoplasmic reticulum-Golgi intermediate compartment Cellular Component
KEGG gene cross-reference
hsa:51112
mmu:217449
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.517
Rank 1 · TkA02G451960 · TK1151
Cytoplasm0.436
Rank 2 · TkA02G451960 · TK1151
Golgi apparatus0.056
Rank 3 · TkA02G451960 · TK1151
Lysosome / Vacuole0.052
Rank 4 · TkA02G451960 · TK1151
Cell membrane0.045
Rank 5 · TkA02G451960 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25062ARM_TT21_N55-91 aa
PF14559TPR_1966-91 aa
PF07719TPR_268-87 aa
PF00515TPR_172-85 aa
PF29127SUCH1_C199-236 aa
PF14559TPR_19207-228 aa
PF07719TPR_2208-226 aa
PF00515TPR_1210-224 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G451960PF25062ARM_TT21_N55910.1312.7
TkA02G451960PF14559TPR_1966910.02815.4
TkA02G451960PF07719TPR_268876.4e-0729.7
TkA02G451960PF00515TPR_172850.0004920.5
TkA02G451960PF29127SUCH1_C1992360.05613.7
TkA02G451960PF14559TPR_192072280.02815.4
TkA02G451960PF07719TPR_22082266.4e-0729.7
TkA02G451960PF00515TPR_12102240.0004920.5
TkA02G451960PF29127SUCH1_C2432740.05613.7
TkA02G451960PF07719TPR_22502766.4e-0729.7
TkA02G451960PF00515TPR_12512760.0004920.5
TkA02G451960PF25062ARM_TT21_N2582760.1312.7
TkA02G451960PF14559TPR_192593090.02815.4
TkA02G451960PF01021TYA2713290.07812.7
TkA02G451960PF00515TPR_12823110.0004920.5
TkA02G451960PF07719TPR_22833126.4e-0729.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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