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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G451940
Reference: TK1151 Chr: Chr02 Coordinates: 115005556-115013509 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

7031 bp · TkA02G451940|TK1151|cDNA

TTTCGGCTCACTAAACAAACTTCCTAGCTAGAGGGTGTAAGATTCGGAACGTGAACCAAGCGAAAACTAGGCGGAACAGCTAGTGTGATCTGAGCTGTCGGTGGCTGGCAGCTCACCCCCACCCCACACTCCCCCTCTCTGATGCATACTTGTTAACTACTCTTCTCCGTCATTGTTTCTCATATCTTGGTCTTCTTCACTTATCTGCCACAAAATTCGTCAAATGTACTGAAACATCAAATCTATCAGTATCCCCGACT...

CDS

Download CDS FASTA

6330 bp · TkA02G451940|TK1151|CDS

ATGACTCCACATTCTCTAACAAAAATGGGCTCAAGAGAGCGTAGTAGCATGGAGGATCCAGATGGGACATTATCAAGTGTTGCCCATTGCATCGAACAATTACGCCAAAAATCATCATCTTCCCAAGACCAAGAGTTCAGTTTGAAACAGTTACTAGACCTAATCAACACACGTGAAGGTGCATTCAGTGCTGTTAGTTCACATTCACAAGCAGTTCCAGTTCTAGTATCTCTCCTAAGATCCGGATCACTTGGTGTCAA...

Protein

Download Protein FASTA

2109 aa · TkA02G451940|TK1151|PROTEIN

MTPHSLTKMGSRERSSMEDPDGTLSSVAHCIEQLRQKSSSSQDQEFSLKQLLDLINTREGAFSAVSSHSQAVPVLVSLLRSGSLGVKIQAATVLGSLCKENELRVKVLLGGCIPPLLALLKSKEGQITAANTIYAVSEGDAKDHVGSKIFATEGVVPVLWKQLEKGSKVVDDLLTGALRNLCGTTEGFWSATVKAGGEDILVKLLTHDQSNTQANVCFLLSCMMMEDASVCEKVSTSETTKQLLKLLGPGYEPPVRAQAA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G451940
TK1151 IDTkA02G451940
OH-1004 IDLXL04_014117
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.600
Protein coverage (%)TK1151 100.000 / OH-1004 94.273
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G451940
LocationChr02:115005556-115013509 (+)
DescriptionSimilar to CSI1: Protein CELLULOSE SYNTHASE INTERACTIVE 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g22125 Regulator of the microtubular cytoskeleton.
POM-POM2/cellulose synthase interacting1 is essential for the functional association of cellulose synthase and microtubules in Arabidopsis.2012 · DOI: 10.1105/tpc.111.093575
The Arabidopsis ARCP protein, CSI1, which is required for microtubule stability, is necessary for root and anther development.2012 · DOI: 10.1105/tpc.111.095059
Impaired cellulose synthase guidance leads to stem torsion and twists phyllotactic patterns in Arabidopsis.2013 · DOI: 10.1016/j.cub.2013.04.013
Cellulose synthase INTERACTIVE3 regulates cellulose biosynthesis in both a microtubule-dependent and microtubule-independent manner in Arabidopsis.2013 · DOI: 10.1105/tpc.113.116715
CESA TRAFFICKING INHIBITOR inhibits cellulose deposition and interferes with the trafficking of cellulose synthase complexes and their associated proteins KORRIGAN1 and POM2/CELLULOSE SYNTHASE INTERACTIVE PROTEIN1.2015 · DOI: 10.1104/pp.114.249003
At1g77460 Regulator of the microtubular cytoskeleton (By similarity).
Cellulose synthase INTERACTIVE3 regulates cellulose biosynthesis in both a microtubule-dependent and microtubule-independent manner in Arabidopsis.2013 · DOI: 10.1105/tpc.113.116715
At1g44120 Regulator of the microtubular cytoskeleton. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014117 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007166 cell surface receptor signaling pathway Biological Process
GO:0008360 regulation of cell shape Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009826 unidimensional cell growth Biological Process
GO:0009833 plant-type primary cell wall biogenesis Biological Process
GO:0009901 anther dehiscence Biological Process
GO:0010208 pollen wall assembly Biological Process
GO:0010215 cellulose microfibril organization Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0030244 cellulose biosynthetic process Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0043622 cortical microtubule organization Biological Process
KEGG gene cross-reference
ath:AT1G44120
ath:AT1G77460
ath:AT2G22125
ath:AT3G46510
ath:AT5G67340
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.514
Rank 1 · TkA02G451940 · TK1151
Nucleus0.342
Rank 2 · TkA02G451940 · TK1151
Cell membrane0.199
Rank 3 · TkA02G451940 · TK1151
Endoplasmic reticulum0.062
Rank 4 · TkA02G451940 · TK1151
Golgi apparatus0.047
Rank 5 · TkA02G451940 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25598ARM_PUB13-272 aa
PF24768ARM_ARMC526-125 aa
PF06371Drf_GBD27-98 aa
PF25151TPR_Trm732_C31-104 aa
PF23191WHD_MCM3_C31-59 aa
PF23271HEAT_GCN133-130 aa
PF24959FH3_FHOD1-344-100 aa
PF22958Ltn1_1st45-86 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G451940PF25598ARM_PUB132721.6e-2487.6
TkA02G451940PF24768ARM_ARMC5261254.7e-36125.4
TkA02G451940PF06371Drf_GBD27980.002318.2
TkA02G451940PF25151TPR_Trm732_C311040.6910.5
TkA02G451940PF23191WHD_MCM3_C31595.28.1
TkA02G451940PF23271HEAT_GCN1331301.5e-0939.0
TkA02G451940PF24959FH3_FHOD1-3441000.03214.7
TkA02G451940PF22958Ltn1_1st45861.09.5
TkA02G451940PF03224V-ATPase_H_N661211.2e-0732.2
TkA02G451940PF13646HEAT_2671011.8e-1867.3
TkA02G451940PF00514Arm68982.3e-41139.2
TkA02G451940PF13513HEAT_EZ68977.4e-1246.2
TkA02G451940PF02985HEAT72998.8e-0832.4
TkA02G451940PF28415SIL1_FES1_HPBP1_C731370.01815.2
TkA02G451940PF13513HEAT_EZ871357.4e-1246.2
TkA02G451940PF00514Arm1111242.3e-41139.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4IIM1Arabidopsis thalianasp|F4IIM1|CSI1_ARATH Protein CELLULOSE SYNTHASE INTERACTIVE 169.800%Swiss-ProtHigh
F4I718Arabidopsis thalianasp|F4I718|CSI3_ARATH Protein CELLULOSE SYNTHASE INTERACTIVE 345.300%Swiss-ProtMedium
Q9C6Y4Arabidopsis thalianasp|Q9C6Y4|CSI2_ARATH Protein CELLULOSE SYNTHASE INTERACTIVE 235.400%Swiss-ProtMedium

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