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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G451490
Reference: TK1151 Chr: Chr02 Coordinates: 114874788-114877642 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2706 bp · TkA02G451490|TK1151|cDNA

ATGAAGATGCATGATGTCGTTTGTACTTCTCGTTGGCTTCAAAAGTTTGACACCTGGAAGCCCACAAGCAATTCATCAGATATTGGTTTTGATTGTTGTAAGTGGGATGGGGTGTTATGCCGAAATGAAGATCAAGTGATCGGGCTTGACTTGAGTGAAAGCTTTCTTTGTGGGCATATCAACTCTACCAGTACCCTCTTCAACCTTGTTAATCTTCAGACGCTTAACCTAGCAATGAACAACTTCAATGAATCTAAAAT...

CDS

Download CDS FASTA

2706 bp · TkA02G451490|TK1151|CDS

ATGAAGATGCATGATGTCGTTTGTACTTCTCGTTGGCTTCAAAAGTTTGACACCTGGAAGCCCACAAGCAATTCATCAGATATTGGTTTTGATTGTTGTAAGTGGGATGGGGTGTTATGCCGAAATGAAGATCAAGTGATCGGGCTTGACTTGAGTGAAAGCTTTCTTTGTGGGCATATCAACTCTACCAGTACCCTCTTCAACCTTGTTAATCTTCAGACGCTTAACCTAGCAATGAACAACTTCAATGAATCTAAAAT...

Protein

Download Protein FASTA

901 aa · TkA02G451490|TK1151|PROTEIN

MKMHDVVCTSRWLQKFDTWKPTSNSSDIGFDCCKWDGVLCRNEDQVIGLDLSESFLCGHINSTSTLFNLVNLQTLNLAMNNFNESKIPSEIALLKQLKSLNLSDSGFTGEIPIEISKLVQLYSLDLSRNPLKLQSPGLNLVQNMTTLEVLHLSGVDVSSSVPHFLANFSSLRSIRLFGCLLQGEFPSAIFNLPKLEILSLASNANLTGSFPEFRKKSLLRVVNVALTSFFGIIPESISNLNHLIYFRLTACSFSGHIPDF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G451490
TK1151 IDTkA02G451490
OH-1004 IDLXL04_037940
Relationship / confidenceMulti Candidate From Tk1151 / Complex relationship
Protein identity (%)61.400
Protein coverage (%)TK1151 96.559 / OH-1004 48.853
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G451490
LocationChr02:114874788-114877642 (+)
DescriptionSimilar to RLP6: Receptor-like protein 6
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g47890 Receptor-like protein 7. No verified direct reference in this release
At5g27060 Receptor-like protein 53. No verified direct reference in this release
At3g05650 Receptor-like protein 32. No verified direct reference in this release
At3g11080 Receptor-like protein 35. No verified direct reference in this release
At3g05660 Receptor-like protein 33. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_037940 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007165 signal transduction Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT1G45616
ath:AT1G47890
ath:AT4G13920
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.858
Rank 1 · TkA02G451490 · TK1151
Endoplasmic reticulum0.094
Rank 2 · TkA02G451490 · TK1151
Cytoplasm0.061
Rank 3 · TkA02G451490 · TK1151
Nucleus0.052
Rank 4 · TkA02G451490 · TK1151
Lysosome / Vacuole0.022
Rank 5 · TkA02G451490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23952LRR_EndoS51-104 aa
PF23598LRR_1458-181 aa
PF12799LRR_459-83 aa
PF24758LRR_At5g5637059-105 aa
PF13855LRR_864-104 aa
PF25013LRR_Zer-165-129 aa
PF29594LRR_SKP265-197 aa
PF24048LRR_NXF1-568-132 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G451490PF23952LRR_EndoS511040.2912.1
TkA02G451490PF23598LRR_14581819.4e-2794.4
TkA02G451490PF12799LRR_459831.8e-2692.3
TkA02G451490PF24758LRR_At5g56370591055.4e-0523.7
TkA02G451490PF13855LRR_8641042.9e-33114.1
TkA02G451490PF25013LRR_Zer-1651298.2e-1039.7
TkA02G451490PF29594LRR_SKP2651970.0006419.8
TkA02G451490PF24048LRR_NXF1-5681320.2511.7
TkA02G451490PF23211LRR_LRWD1691059.3e-0626.2
TkA02G451490PF00560LRR_171925e-37118.6
TkA02G451490PF13855LRR_8711312.9e-33114.1
TkA02G451490PF13516LRR_671820.05614.2
TkA02G451490PF12799LRR_4951311.8e-2692.3
TkA02G451490PF00560LRR_1961185e-37118.6
TkA02G451490PF13516LRR_6971100.05614.2
TkA02G451490PF23952LRR_EndoS1111590.2912.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C699Arabidopsis thalianasp|Q9C699|RLP7_ARATH Receptor-like protein 736.300%Swiss-ProtMedium
Q9S9U3Arabidopsis thalianasp|Q9S9U3|RLP53_ARATH Receptor-like protein 5335.800%Swiss-ProtLow
Q9M9X0Arabidopsis thalianasp|Q9M9X0|RLP32_ARATH Receptor-like protein 3241.900%Swiss-ProtMedium
Q9SRL7Arabidopsis thalianasp|Q9SRL7|RLP35_ARATH Receptor-like protein 3533.200%Swiss-ProtLow
F4J8G2Arabidopsis thalianasp|F4J8G2|RLP33_ARATH Receptor-like protein 3342.900%Swiss-ProtMedium

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